RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 CkbQ04447 381 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Tjp2Q9Z0U1 1167 aaKnown RBP12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Tmc8Q7TN58 722 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Plekha6Q7TQG1 1173 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 4931406P16RikQ8C5X1 1059 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 XntrpcF8VQM8 1264 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Tnfrsf11bO08712 401 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Slc16a2O70324 545 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Klra5Q60652 266 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Il17raQ60943 864 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Gm2163Q6PCY5 473 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Fbxl21Q8BFZ4 434 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Znf879Q8BI99 563 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Hspa13Q8BM72 471 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 AvenQ9D9K3 342 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 ChmlQ9QZD5 621 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Trpc2Q9R244 1172 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Guca2bO09051 106 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Usp4P35123 962 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Rgs9bpQ148R9 237 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Tbc1d13Q8R3D1 400 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Chd4Q6PDQ2 1915 aaKnown RBP12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Bnc1O35914 961 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 KdsrQ6GV12 332 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Phf24Q80TL4 400 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Pcdhb1Q91Y08 818 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Serpina1fQ9DCQ7 411 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Tbx18Q9EPZ6 613 aa12.23□□□□□ -0.45
Trim56-201ENSMUST00000054384 Prrg1A2BFE8 218 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Epb41l4aP52963 686 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 RalgdsQ03385 852 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Uhrf1bp1B2KF50 1429 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Zfp984A2A7A2 547 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Rtn2O70622 471 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Sesn1P58006 492 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Clip4Q8CI96 704 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Tma7Q8K003 64 aaKnown RBP12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Rsrc2A2RTL5 376 aaKnown RBP12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Gucy1a2F8VQK3 730 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Smyd1P97443 490 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Pik3r5Q5SW28 871 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Ddx3xQ62167 662 aaKnown RBP12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Naif1Q6PFD7 327 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Lsm8Q6ZWM4 96 aaKnown RBP12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Lrrc75bQ7TPD7 306 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Btbd10Q80X66 475 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Kansl2Q8BQR4 486 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Mrpl19Q9D338 292 aaKnown RBP12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Ehd3Q9QXY6 535 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Gyg1Q9R062 333 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 CpdO89001 1377 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 H2-EaP01904 255 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 P04224 255 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Atp5bP56480 529 aaKnown RBP12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 NcstnP57716 708 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Defa17Q64016 82 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Noc4lQ8BHY2 516 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Prmt3Q922H1 532 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Kcnh7Q9ER47 1195 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Rasgrp2Q9QUG9 608 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Mbd2Q9Z2E1 414 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Efcab12V9GXH0 673 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Nfkb1P25799 971 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Ccng1P51945 294 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Ctdnep1Q3TP92 244 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Kctd8Q50H33 476 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Zdhhc12Q8VC90 267 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Acot13Q9CQR4 140 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Arih1Q9Z1K5 555 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Ugt1a8D3Z748 530 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Ugt1a10E9PXN7 530 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 PigrO70570 771 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 ZbbxQ0P5X5 716 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Fam172aQ3TNH5 417 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Zfp78Q5U406 512 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Gpr139Q80UC8 345 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Abca6Q8K441 1624 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Scgb2b7D3YYY1 112 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 PolnQ7TQ07 864 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Usp27Q8CEG8 438 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Ces4aQ8R0W5 563 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Pdcd10Q8VE70 212 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Vps28Q9D1C8 221 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Sh3glb1Q9JK48 365 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Nek2O35942 443 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Stk16O88697 305 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Fgl2P12804 432 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Itga1Q3V3R4 1179 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Sfmbt2Q5DTW2 938 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Sh3kbp1Q8R550 709 aaKnown RBP12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 Ilf2Q9CXY6 390 aaKnown RBP12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 MtrexQ9CZU3 1040 aaKnown RBP12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 4930503E14RikQ9D583 177 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 RhouQ9EQT3 261 aa12.22□□□□□ -0.45
Trim56-201ENSMUST00000054384 NuggcD3YWJ0 796 aa12.21□□□□□ -0.45
Trim56-201ENSMUST00000054384 H2-AaP01910 256 aa12.21□□□□□ -0.45
Trim56-201ENSMUST00000054384 Rit2P70425 217 aa12.21□□□□□ -0.45
Trim56-201ENSMUST00000054384 Brsk2Q69Z98 735 aa12.21□□□□□ -0.45
Trim56-201ENSMUST00000054384 FsbpQ8BKE5 299 aa12.21□□□□□ -0.45
Trim56-201ENSMUST00000054384 Ckap4Q8BMK4 575 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 22,080 RNA–protein pairs in 22.1 ms