RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Tsga10Q6NY15 697 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 CcnyQ8BGU5 341 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Heatr3Q8BQM4 679 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Zmym6Q8BS54 1249 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Pdcd2lQ8C5N5 364 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Olfr1353Q8VGU8 309 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Ppp2r2dQ925E7 453 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Gpr37l1Q99JG2 481 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Prc1Q99K43 603 aaKnown RBP9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 CenpkQ9ESN5 271 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 GabrqQ9JLF1 638 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Tmem59Q9QY73 323 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 9230113P08RikD3YWX3 137 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Kctd18E0CZ26 429 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Zfp850J3QPC5 689 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Kifc3O35231 824 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Pax3P24610 479 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 YwhaqP68254 245 aaKnown RBP9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Pld5Q3UNN8 536 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Ifnl2Q4VK74 193 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Gm4952Q5FW57 296 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Trim38Q5SZ99 471 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Pick1Q62083 416 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Colgalt2Q6NVG7 625 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 AmphQ7TQF7 686 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Tcf25Q8R3L2 676 aaKnown RBP9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Il36gQ8R460 164 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Tti1Q91V83 1085 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Npffr2Q924H0 417 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Pex6Q99LC9 981 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Abcg3Q99P81 650 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Iqcf1Q9D9K8 182 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Smg9Q9DB90 520 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Xpo7Q9EPK7 1087 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Wdr54Q9R0D8 334 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Gm6205E9PZS2 359 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Gm7995L7N2E4 160 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Kif3cO35066 796 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 ShdO88834 343 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 P01878 344 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Rab20P35295 233 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Apobec1P51908 229 aaKnown RBP9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 RabggtbP53612 339 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Lman2lP59481 347 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Fubp3Q3TIX6 575 aaKnown RBP9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Atp13a5Q3TYU2 1216 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Cd6Q61003 665 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Mef2dQ63943 514 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Vmn2r26Q6TAC4 855 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Ostm1Q8BGT0 338 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Gm6367Q8C6L9 287 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Rbm12Q8R4X3 992 aaKnown RBP9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Sh2b1Q91ZM2 756 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Grhl1Q921D9 618 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Lysmd3Q99LE3 305 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Spg21Q9CQC8 308 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Zcchc8Q9CYA6 709 aaKnown RBP9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Syde1Q9DBZ9 737 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 NckipsdQ9ESJ4 714 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Map3k14Q9WUL6 942 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Padi3Q9Z184 664 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 TrioQ0KL02 3102 aa9.02□□□□□ -0.97
Trim39-201ENSMUST00000042717 Slc23a4A0A0J9YUX7 615 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Lcn6A2AJB9 181 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Rhox3fA2ANE1 215 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Wnt6P22727 364 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Frg1P97376 258 aaKnown RBP9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 PkdccQ5RJI4 492 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Itga3Q62470 1053 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Lilrb4Q64281 335 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Vtcn1Q7TSP5 283 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Fbxo38Q8BMI0 1194 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Mfsd14bQ8CIA9 507 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 D8Ertd738eQ8R1F0 94 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Mtss1Q8R1S4 759 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Tmem161aQ8VCA6 480 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Pcdhgb1Q91XX8 918 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Synpo2Q91YE8 1087 aaKnown RBP9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Lgals2Q9CQW5 130 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Nudt8Q9CR24 210 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 ArskQ9D2L1 553 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Nxnl2Q9D531 156 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Syap1Q9D5V6 365 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 PgcQ9D7R7 392 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 EtfbQ9DCW4 255 aaKnown RBP9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Vwa7Q9JHA8 891 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Klrc2Q9WTJ9 238 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Zc3h4Q6ZPZ3 1304 aaKnown RBP9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 9330159F19RikD3Z623 648 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Zfp715G3X9T1 886 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Cyp17a1P27786 507 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Olfr1198Q7TR12 308 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Q80Y73 168 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Orai2Q8BH10 250 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Fra10ac1Q8BP78 315 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Phactr3Q8BYK5 558 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Nipal4Q8BZF2 406 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Sept10Q8C650 452 aa9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Ddx47Q9CWX9 455 aaKnown RBP9.01□□□□□ -0.97
Trim39-201ENSMUST00000042717 Ccdc124Q9D8X2 217 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 22,080 RNA–protein pairs in 64.4 ms