RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 EXOSC6Q5RKV6 272 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 BEND6Q5SZJ8 279 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RPTNQ6XPR3 784 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CCDC36Q8IYA8 594 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ZBED8Q8IZ13 594 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SLC7A14Q8TBB6 771 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FAM81AQ8TBF8 368 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SEPT1Q8WYJ6 367 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 LPIN2Q92539 896 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MAGEB18Q96M61 343 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 OMDQ99983 421 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 THTPAQ9BU02 230 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 LRRC2Q9BYS8 371 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 GOLPH3LQ9H4A5 285 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 EHD1Q9H4M9 534 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 COQ3Q9NZJ6 369 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TBC1D7Q9P0N9 293 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 AK5Q9Y6K8 562 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PLCH2O75038 1416 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TUBAL3A6NHL2 446 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 A8MXQ7 604 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 C1QTNF3-AMACRE9PGA6 284 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PGRMC1O00264 195 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PPEF1O14829 653 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TNFRSF21O75509 655 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 AFPP02771 609 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 USP17L8P0C7I0 530 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CCNYL3P0C7X3 344 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RARAP10276 462 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 AKR1A1P14550 325 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 DSG2Q14126 1118 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CALCRLQ16602 461 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ABCB5Q2M3G0 1257 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 EFHC2Q5JST6 749 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SLC9C2Q5TAH2 1124 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 GALNT7Q86SF2 657 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 C12orf40Q86WS4 652 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CREG2Q8IUH2 290 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MSL3Q8N5Y2 521 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 USHBP1Q8N6Y0 703 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PXYLP1Q8TE99 480 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 OTUD5Q96G74 571 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FRMD6Q96NE9 622 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FMO2Q99518 471 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SPATA5L1Q9BVQ7 753 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CADM1Q9BY67 442 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 C6orf62Q9GZU0 229 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 NRDE2Q9H7Z3 1164 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 KANSL2Q9H9L4 492 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CATSPERZQ9NTU4 200 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 GMNCA6NCL1 334 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 H7C1Q1 480 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 CLIC2O15247 247 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FKTNO75072 461 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 NR3C2P08235 984 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PDGFRBP09619 1106 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PAICSP22234 425 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FOXN2P32314 431 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TUFMP49411 452 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PSMD4P55036 377 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SMARCB1Q12824 385 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RBBP7Q16576 425 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RABGAP1LQ5R372 815 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FBXO38Q6PIJ6 1188 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 NEK9Q8TD19 979 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 LARP4BQ92615 738 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MS4A14Q96JA4 679 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF285Q96NJ3 590 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TGS1Q96RS0 853 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF577Q9BSK1 485 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 GSDMCQ9BYG8 508 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 BCO2Q9BYV7 579 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 XPO4Q9C0E2 1151 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 C20orf96Q9NUD7 363 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 UBA2Q9UBT2 640 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SLC27A6Q9Y2P4 619 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ITIH6Q6UXX5 1313 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 NPHP3-ACAD11A0A0J9YXS1 232 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TCP11X1B4DZS4 312 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 H7C0C1 242 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 PIK3R2O00459 728 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 KPNA5O15131 536 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 SEC24DO94855 1032 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 TTLL1O95922 423 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RLN1P04808 185 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 FUT4P22083 530 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 KLRC2P26717 231 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RPA1P27694 616 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ATP5OP48047 213 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 MAPKAPK2P49137 400 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ECH1Q13011 328 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 NCF4Q15080 339 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 NAALADL2Q58DX5 795 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 XKR4Q5GH76 650 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RESP18Q5W5W9 173 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 NEK10Q6ZWH5 1172 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 P4HA3Q7Z4N8 544 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 R3HCC1LQ7Z5L2 792 aaKnown RBP2.86□□□□□ -1.95
SCN1A-219ENST00000641575 RNF135Q8IUD6 432 aa2.86□□□□□ -1.95
SCN1A-219ENST00000641575 ASCC1Q8N9N2 400 aaKnown RBP2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms