RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 E2F4Q16254 413 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 ATL3Q6DD88 541 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 STXBP4Q6ZWJ1 553 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 TMPRSS6Q8IU80 811 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 BRSK2Q8IWQ3 736 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 SPACA3Q8IXA5 215 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 SYCP3Q8IZU3 236 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 IQUBQ8NA54 791 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 PDZD8Q8NEN9 1154 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 TMEM176AQ96HP8 235 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 FAM213AQ9BRX8 229 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 TRIM9Q9C026 710 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 SEMA4CQ9C0C4 833 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 KBTBD4Q9NVX7 518 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 WDR35Q9P2L0 1181 aa17.27■□□□□ 0.36
CLN3-264ENST00000637985 COL12A1Q99715 3063 aa17.27■□□□□ 0.35
CLN3-264ENST00000637985 H0Y8X5 98 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 WISP1O95388 367 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 F13A1P00488 732 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 C1SP09871 688 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 WARSP23381 471 aaKnown RBP17.26■□□□□ 0.35
CLN3-264ENST00000637985 GRIA4P48058 902 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 DGKGP49619 791 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 TUBP50607 506 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 CASP5P51878 434 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 RHDQ02161 417 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 IFRD2Q12894 506 aaPredicted RBP17.26■□□□□ 0.35
CLN3-264ENST00000637985 ENPP2Q13822 863 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 TEAD4Q15561 434 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 INAVAQ3KP66 663 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 HTR3DQ70Z44 454 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 FMNL3Q8IVF7 1028 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 NUP93Q8N1F7 819 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 ZSWIM2Q8NEG5 633 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 SIPA1Q96FS4 1042 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 CCSER2Q9H7U1 834 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 CHORDC1Q9UHD1 332 aaPredicted RBP17.26■□□□□ 0.35
CLN3-264ENST00000637985 UNC79Q9P2D8 2635 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 NUMA1Q14980 2115 aa17.26■□□□□ 0.35
CLN3-264ENST00000637985 TULP1O00294 542 aaPredicted RBP17.25■□□□□ 0.35
CLN3-264ENST00000637985 CCDC173Q0VFZ6 552 aa17.25■□□□□ 0.35
CLN3-264ENST00000637985 MDH1BQ5I0G3 518 aa17.25■□□□□ 0.35
CLN3-264ENST00000637985 FOXD4L5Q5VV16 416 aaPredicted RBP17.25■□□□□ 0.35
CLN3-264ENST00000637985 CNNM4Q6P4Q7 775 aa17.25■□□□□ 0.35
CLN3-264ENST00000637985 SHC4Q6S5L8 630 aa17.25■□□□□ 0.35
CLN3-264ENST00000637985 HS2ST1Q7LGA3 356 aa17.25■□□□□ 0.35
CLN3-264ENST00000637985 FOXD4L4Q8WXT5 416 aaPredicted RBP17.25■□□□□ 0.35
CLN3-264ENST00000637985 PRCCQ92733 491 aaPredicted RBP17.25■□□□□ 0.35
CLN3-264ENST00000637985 FBXO32Q969P5 355 aa17.25■□□□□ 0.35
CLN3-264ENST00000637985 MTMR12Q9C0I1 747 aa17.25■□□□□ 0.35
CLN3-264ENST00000637985 MAGEF1Q9HAY2 307 aa17.25■□□□□ 0.35
CLN3-264ENST00000637985 TM9SF3Q9HD45 589 aa17.25■□□□□ 0.35
CLN3-264ENST00000637985 CFAP45Q9UL16 551 aa17.25■□□□□ 0.35
CLN3-264ENST00000637985 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.25■□□□□ 0.35
CLN3-264ENST00000637985 NME7Q9Y5B8 376 aa17.25■□□□□ 0.35
CLN3-264ENST00000637985 MYH10P35580 1976 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 ENC1O14682 589 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 KIAA0391O15091 583 aaKnown RBP17.24■□□□□ 0.35
CLN3-264ENST00000637985 NPC1O15118 1278 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 RFPL3O75679 317 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 RTN3O95197 1032 aaPredicted RBP17.24■□□□□ 0.35
CLN3-264ENST00000637985 ZDHHC11BP0C7U3 371 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 IRF1P10914 325 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 C6P13671 934 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 ACO1P21399 889 aaKnown RBP17.24■□□□□ 0.35
CLN3-264ENST00000637985 IL12RB1P42701 662 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 CTSKP43235 329 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 ORC1Q13415 861 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 PKDCCQ504Y2 493 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 KCNT1Q5JUK3 1230 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 FBXL19Q6PCT2 694 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 TPGS1Q6ZTW0 290 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 ERICH1Q86X53 443 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 SNX19Q92543 992 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 DHX58Q96C10 678 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 HPDLQ96IR7 371 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 FGFBP2Q9BYJ0 223 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 ZNF518BQ9C0D4 1074 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 ELOVL4Q9GZR5 314 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 C6orf106Q9H6K1 298 aaPredicted RBP17.24■□□□□ 0.35
CLN3-264ENST00000637985 RBAKQ9NYW8 714 aaPredicted RBP17.24■□□□□ 0.35
CLN3-264ENST00000637985 THAP10Q9P2Z0 257 aaPredicted RBP17.24■□□□□ 0.35
CLN3-264ENST00000637985 FBXO10Q9UK96 956 aa17.24■□□□□ 0.35
CLN3-264ENST00000637985 CKAP5Q14008 2032 aa17.23■□□□□ 0.35
CLN3-264ENST00000637985 BRINP1O60477 761 aa17.23■□□□□ 0.35
CLN3-264ENST00000637985 PRPF6O94906 941 aaKnown RBP17.23■□□□□ 0.35
CLN3-264ENST00000637985 ACTN2P35609 894 aa17.23■□□□□ 0.35
CLN3-264ENST00000637985 COPAP53621 1224 aa17.23■□□□□ 0.35
CLN3-264ENST00000637985 IL9RQ01113 521 aa17.23■□□□□ 0.35
CLN3-264ENST00000637985 KCNH2Q12809 1159 aa17.23■□□□□ 0.35
CLN3-264ENST00000637985 HES3Q5TGS1 186 aa17.23■□□□□ 0.35
CLN3-264ENST00000637985 LAYNQ6UX15 382 aa17.23■□□□□ 0.35
CLN3-264ENST00000637985 SAAL1Q96ER3 474 aa17.23■□□□□ 0.35
CLN3-264ENST00000637985 C7orf25Q9BPX7 421 aa17.23■□□□□ 0.35
CLN3-264ENST00000637985 FAM13BQ9NYF5 915 aa17.23■□□□□ 0.35
CLN3-264ENST00000637985 IL37Q9NZH6 218 aa17.23■□□□□ 0.35
CLN3-264ENST00000637985 A0A1B0GTQ1 180 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 CBX4O00257 560 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 EIF3DO15371 548 aaKnown RBP eCLIP17.22■□□□□ 0.35
CLN3-264ENST00000637985 DFNA5O60443 496 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms