RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 C11orf96Q7Z7L8 435 aa9.53□□□□□ -0.88
GGA3-223ENST00000621870 ZDHHC17Q8IUH5 632 aa9.53□□□□□ -0.88
GGA3-223ENST00000621870 TNFRSF25Q93038 417 aa9.53□□□□□ -0.88
GGA3-223ENST00000621870 MYLPFQ96A32 169 aa9.53□□□□□ -0.88
GGA3-223ENST00000621870 HSFY1Q96LI6 401 aa9.53□□□□□ -0.88
GGA3-223ENST00000621870 TTPALQ9BTX7 342 aa9.53□□□□□ -0.88
GGA3-223ENST00000621870 TUBB6Q9BUF5 446 aa9.53□□□□□ -0.88
GGA3-223ENST00000621870 ADGRE3Q9BY15 652 aa9.53□□□□□ -0.88
GGA3-223ENST00000621870 TM6SF2Q9BZW4 377 aa9.53□□□□□ -0.88
GGA3-223ENST00000621870 BRD8Q9H0E9 1235 aa9.53□□□□□ -0.88
GGA3-223ENST00000621870 ABCC13Q9NSE7 274 aa9.53□□□□□ -0.88
GGA3-223ENST00000621870 ZFP69BQ9UJL9 534 aa9.53□□□□□ -0.88
GGA3-223ENST00000621870 TRIM66O15016 1216 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 USP12O75317 370 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 ACRP10323 421 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 NOL9Q5SY16 702 aaKnown RBP9.52□□□□□ -0.89
GGA3-223ENST00000621870 PTAR1Q7Z6K3 402 aaPredicted RBP9.52□□□□□ -0.89
GGA3-223ENST00000621870 OOSP2Q86WS3 158 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 SLC9A9Q8IVB4 645 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 SNX31Q8N9S9 440 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 RFWD2Q8NHY2 731 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 BSNDQ8WZ55 320 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 SUSD6Q92537 303 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 ARL8AQ96BM9 186 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.52□□□□□ -0.89
GGA3-223ENST00000621870 DHX33Q9H6R0 707 aaKnown RBP9.52□□□□□ -0.89
GGA3-223ENST00000621870 LRRC40Q9H9A6 602 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 OR12D3Q9UGF7 316 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 TCP11X1B4DZS4 312 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 H0Y3Z8 333 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 EPHB6O15197 1021 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 CYP2C18P33260 490 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 ACLYP53396 1101 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 GEMIN4P57678 1058 aaKnown RBP9.52□□□□□ -0.89
GGA3-223ENST00000621870 JAG1P78504 1218 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 E2F5Q15329 346 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 KCNT2Q6UVM3 1135 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 IFNEQ86WN2 208 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 LRRC43Q8N309 656 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 FBXO36Q8NEA4 188 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 LZICQ8WZA0 190 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 NAT9Q9BTE0 207 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 FGFBP2Q9BYJ0 223 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 ZCWPW1Q9H0M4 648 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 TUBGCP4Q9UGJ1 667 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 COL14A1Q05707 1796 aaKnown RBP9.52□□□□□ -0.89
GGA3-223ENST00000621870 RPTORQ8N122 1335 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 TRDMT1O14717 391 aaKnown RBP9.52□□□□□ -0.89
GGA3-223ENST00000621870 NCAM2O15394 837 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 TLR5O60602 858 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 GLUD1P00367 558 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 ATP5BP06576 529 aaKnown RBP9.52□□□□□ -0.89
GGA3-223ENST00000621870 PYGMP11217 842 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 GABRR2P28476 465 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 HSPA9P38646 679 aaKnown RBP9.52□□□□□ -0.89
GGA3-223ENST00000621870 ATXN3P54252 364 aaPredicted RBP9.52□□□□□ -0.89
GGA3-223ENST00000621870 FBXW4P57775 412 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 FAM83EQ2M2I3 478 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 MSL3Q8N5Y2 521 aaKnown RBP9.52□□□□□ -0.89
GGA3-223ENST00000621870 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.52□□□□□ -0.89
GGA3-223ENST00000621870 SHC3Q92529 594 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 TAS2R14Q9NYV8 317 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 VPS9D1Q9Y2B5 631 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 ABCC6O95255 1503 aa9.52□□□□□ -0.89
GGA3-223ENST00000621870 IGLV3-22A0A075B6J6 115 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 SUPT7LO94864 414 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 AGTP01019 485 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 MYL2P10916 166 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 GLRBP48167 497 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 CLNS1AP54105 237 aaKnown RBP9.51□□□□□ -0.89
GGA3-223ENST00000621870 PPP4R4Q6NUP7 873 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 RGL4Q8IZJ4 473 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 LRRC52Q8N7C0 313 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 C4orf32Q8N8J7 132 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 ANKRD52Q8NB46 1076 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 SHCBP1LQ9BZQ2 653 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 DCLK3Q9C098 648 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 ISCUQ9H1K1 167 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 Q9H521 79 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 NSMCE4AQ9NXX6 385 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 PLK2Q9NYY3 685 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 WWOXQ9NZC7 414 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 GGT7Q9UJ14 662 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 FBXO10Q9UK96 956 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 SMG5Q9UPR3 1016 aaKnown RBP9.51□□□□□ -0.89
GGA3-223ENST00000621870 SHOC2Q9UQ13 582 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 PCDHA2Q9Y5H9 948 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.51□□□□□ -0.89
GGA3-223ENST00000621870 LTBP3Q9NS15 1303 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 LRRC10BA6NIK2 292 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 VPS26AO75436 327 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 CRTAMO95727 393 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 RARAP10276 462 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 RARGP13631 454 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 SYN1P17600 705 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 ITGB6P18564 788 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 MZF1P28698 734 aaPredicted RBP9.51□□□□□ -0.89
GGA3-223ENST00000621870 SOX11P35716 441 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 NCKAP1LP55160 1127 aa9.51□□□□□ -0.89
GGA3-223ENST00000621870 SGCGQ13326 291 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms