RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 GABRR2P28476 465 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 CTNNA1P35221 906 aaKnown RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 RDXP35241 583 aaKnown RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 GTF2F1P35269 517 aaKnown RBP eCLIP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 ATP5C1P36542 298 aaKnown RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 SSR1P43307 286 aaKnown RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 CXCR3P49682 368 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 TUBP50607 506 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 PITX1P78337 314 aaPredicted RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 RBM10P98175 930 aaKnown RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 DEUP1Q05D60 604 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 HYAL1Q12794 435 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 ADAM15Q13444 863 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 CDO1Q16878 200 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 RAB6CQ53S08 254 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 C10orf120Q5SQS8 335 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 ZNF697Q5TEC3 545 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 OTUD1Q5VV17 481 aaPredicted RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 DAB2IPQ5VWQ8 1189 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 SCYL2Q6P3W7 929 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 KLHDC10Q6PID8 442 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 GAREM2Q75VX8 874 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 RSRC2Q7L4I2 434 aaKnown RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 TMC8Q8IU68 726 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 UBL4BQ8N7F7 174 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 EFHBQ8N7U6 833 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 LEMD2Q8NC56 503 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 DQX1Q8TE96 717 aaKnown RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 ZNF592Q92610 1267 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 KRT35Q92764 455 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 ZNF707Q96C28 371 aaPredicted RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 CORO1BQ9BR76 489 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 RAB6CQ9H0N0 254 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 SMOC2Q9H3U7 446 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 ASAH2Q9NR71 780 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 OLA1Q9NTK5 396 aaKnown RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 DZANK1Q9NVP4 752 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 CALCOCO1Q9P1Z2 691 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 DNMT3BQ9UBC3 853 aaKnown RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 PCSK1NQ9UHG2 260 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 SFMBT1Q9UHJ3 866 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 DNMT3LQ9UJW3 386 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 NUDT5Q9UKK9 219 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 USP18Q9UMW8 372 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 PACSIN2Q9UNF0 486 aaPredicted RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 MTCH2Q9Y6C9 303 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 PDE4DIPQ5VU43 2346 aa8.36□□□□□ -1.07
CPNE3-209ENST00000620393 LAMA2P24043 3122 aaKnown RBP8.36□□□□□ -1.07
CPNE3-209ENST00000620393 SOBPA7XYQ1 873 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 SOX1O00570 391 aaPredicted RBP8.35□□□□□ -1.07
CPNE3-209ENST00000620393 PSTPIP1O43586 416 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 PRPSAP2O60256 369 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 TADA3O75528 432 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 ZRANB2O95218 330 aaKnown RBP eCLIP8.35□□□□□ -1.07
CPNE3-209ENST00000620393 RHOP08100 348 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 RARAP10276 462 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 MYL4P12829 197 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 TCF4P15884 667 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 HOXB8P17481 243 aaPredicted RBP8.35□□□□□ -1.07
CPNE3-209ENST00000620393 PFKLP17858 780 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 TCP1P17987 556 aaKnown RBP8.35□□□□□ -1.07
CPNE3-209ENST00000620393 IL1R2P27930 398 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 CDC25CP30307 473 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 ADRA1BP35368 520 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 KPNA1P52294 538 aaPredicted RBP8.35□□□□□ -1.07
CPNE3-209ENST00000620393 ATXN1P54253 815 aaKnown RBP8.35□□□□□ -1.07
CPNE3-209ENST00000620393 RWDD2BP57060 319 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 AMPD2Q01433 879 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 SLC25A11Q02978 314 aaKnown RBP8.35□□□□□ -1.07
CPNE3-209ENST00000620393 EFEMP1Q12805 493 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 NME3Q13232 169 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 NNTQ13423 1086 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 TUBB2AQ13885 445 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 ADGRE1Q14246 886 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 ATP13A4Q4VNC1 1196 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 DNTTIP2Q5QJE6 756 aaKnown RBP8.35□□□□□ -1.07
CPNE3-209ENST00000620393 ERMARDQ5T6L9 678 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 TXNRD3NBQ6F5E7 133 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 SND1Q7KZF4 910 aaKnown RBP eCLIP8.35□□□□□ -1.07
CPNE3-209ENST00000620393 POLNQ7Z5Q5 900 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 TAC4Q86UU9 113 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 PSTKQ8IV42 348 aaKnown RBP8.35□□□□□ -1.07
CPNE3-209ENST00000620393 RCOR2Q8IZ40 523 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 C12orf76Q8N812 135 aaPredicted RBP8.35□□□□□ -1.07
CPNE3-209ENST00000620393 ADAM32Q8TC27 787 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 TEKT4Q8WW24 435 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 MRPS31Q92665 395 aaKnown RBP8.35□□□□□ -1.07
CPNE3-209ENST00000620393 SLC39A13Q96H72 371 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 PBKQ96KB5 322 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 EPAS1Q99814 870 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 TUBB2BQ9BVA1 445 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 RNF38Q9H0F5 515 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 ATXN3LQ9H3M9 355 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 WDCPQ9H6R7 721 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 CCSER2Q9H7U1 834 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 FAM204AQ9H8W3 233 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 SFXN1Q9H9B4 322 aa8.35□□□□□ -1.07
CPNE3-209ENST00000620393 WDR6Q9NNW5 1121 aaKnown RBP8.35□□□□□ -1.07
CPNE3-209ENST00000620393 PIGVQ9NUD9 493 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms