RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ZNF658Q5TYW1 1059 aaPredicted RBP12.51□□□□□ -0.41
UPF3B-204ENST00000619445 TCERG1LQ5VWI1 586 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 PEAR1Q5VY43 1037 aaPredicted RBP12.51□□□□□ -0.41
UPF3B-204ENST00000619445 SLC23A3Q6PIS1 610 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 MIB1Q86YT6 1006 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 SFTPA1Q8IWL2 248 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 FOXJ1Q92949 421 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 PLD4Q96BZ4 506 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 SLC2A11Q9BYW1 496 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 SLC32A1Q9H598 525 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 NMUR1Q9HB89 426 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 METTL14Q9HCE5 456 aaKnown RBP12.51□□□□□ -0.41
UPF3B-204ENST00000619445 OSER1Q9NX31 292 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 SUSD2Q9UGT4 822 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 FBXO10Q9UK96 956 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 COQ4Q9Y3A0 265 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 USP24Q9UPU5 2620 aa12.51□□□□□ -0.41
UPF3B-204ENST00000619445 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 A0A1W2PQF6 199 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 TIMM44O43615 452 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 ZBED1O96006 694 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 PENKP01210 267 aaPredicted RBP12.5□□□□□ -0.41
UPF3B-204ENST00000619445 GABRG2P18507 467 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 PGFP49763 221 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 ATXN3P54252 364 aaPredicted RBP12.5□□□□□ -0.41
UPF3B-204ENST00000619445 RAD23BP54727 409 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 GFPT1Q06210 699 aaPredicted RBP12.5□□□□□ -0.41
UPF3B-204ENST00000619445 CETN1Q12798 172 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 ST3GAL2Q16842 350 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 ZNF394Q53GI3 561 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 SGO2Q562F6 1265 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 RAB41Q5JT25 222 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 SYCP2LQ5T4T6 812 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 EGFLAMQ63HQ2 1017 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 PSAPL1Q6NUJ1 521 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 SCD5Q86SK9 330 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 METTL3Q86U44 580 aaKnown RBP12.5□□□□□ -0.41
UPF3B-204ENST00000619445 TMEFF1Q8IYR6 380 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 CPXM2Q8N436 756 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 SLC4A11Q8NBS3 891 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 IPO4Q8TEX9 1081 aaKnown RBP12.5□□□□□ -0.41
UPF3B-204ENST00000619445 RLN3Q8WXF3 142 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 WBP2Q969T9 261 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 IRX2Q9BZI1 471 aaPredicted RBP12.5□□□□□ -0.41
UPF3B-204ENST00000619445 GOLPH3LQ9H4A5 285 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 MARCH2Q9P0N8 246 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 CALCOCO1Q9P1Z2 691 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 ARMCX3Q9UH62 379 aaPredicted RBP12.5□□□□□ -0.41
UPF3B-204ENST00000619445 PILRBQ9UKJ0 227 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 SLC6A14Q9UN76 642 aa12.5□□□□□ -0.41
UPF3B-204ENST00000619445 UPK3BL1B0FP48 263 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 UPK3BL2E5RIL1 263 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 PSMA7O14818 248 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 XPO1O14980 1071 aaKnown RBP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 LATS1O95835 1130 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 SYPP08247 313 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 SERPINF2P08697 491 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 CISD3P0C7P0 127 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 SETSIPP0DME0 302 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 CORO1AP31146 461 aaKnown RBP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 PTGER3P43115 390 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 HARS2P49590 506 aaKnown RBP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 YWHAGP61981 247 aaKnown RBP eCLIP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 IRX4P78413 519 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 NUCB2P80303 420 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 BST2Q10589 180 aaKnown RBP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 EFEMP1Q12805 493 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 CUL2Q13617 745 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 HNRNPDQ14103 355 aaKnown RBP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 STILQ15468 1287 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 DCAF17Q5H9S7 520 aaPredicted RBP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 PM20D1Q6GTS8 502 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 ANKS1BQ7Z6G8 1248 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 PIGZQ86VD9 579 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 ZC3H3Q8IXZ2 948 aaKnown RBP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 ELOA2Q8IYF1 753 aaPredicted RBP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 FMR1NBQ8N0W7 255 aaPredicted RBP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 ZNF557Q8N988 423 aaPredicted RBP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 RNF139Q8WU17 664 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 SEMA4DQ92854 862 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 SMARCE1Q969G3 411 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 TIGD1Q96MW7 591 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 IPO9Q96P70 1041 aaKnown RBP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 LRRC4Q9HBW1 653 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 MBD1Q9UIS9 605 aaPredicted RBP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 RASAL2Q9UJF2 1139 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 HBS1LQ9Y450 684 aaKnown RBP12.49□□□□□ -0.41
UPF3B-204ENST00000619445 NFE2L3Q9Y4A8 694 aa12.49□□□□□ -0.41
UPF3B-204ENST00000619445 CDX4O14627 284 aaPredicted RBP12.48□□□□□ -0.41
UPF3B-204ENST00000619445 PMM2O15305 246 aa12.48□□□□□ -0.41
UPF3B-204ENST00000619445 SYNCRIPO60506 623 aaKnown RBP12.48□□□□□ -0.41
UPF3B-204ENST00000619445 NDUFS2O75306 463 aa12.48□□□□□ -0.41
UPF3B-204ENST00000619445 VDRP11473 427 aa12.48□□□□□ -0.41
UPF3B-204ENST00000619445 GNSP15586 552 aa12.48□□□□□ -0.41
UPF3B-204ENST00000619445 NDUFV2P19404 249 aa12.48□□□□□ -0.41
UPF3B-204ENST00000619445 RDXP35241 583 aaKnown RBP12.48□□□□□ -0.41
UPF3B-204ENST00000619445 PRCPP42785 496 aa12.48□□□□□ -0.41
UPF3B-204ENST00000619445 TKTL1P51854 596 aa12.48□□□□□ -0.41
UPF3B-204ENST00000619445 ZNF33AQ06730 810 aa12.48□□□□□ -0.41
UPF3B-204ENST00000619445 PDE4CQ08493 712 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms