RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ADRB2P07550 413 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 RBL1P28749 1068 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 ST8SIA6P61647 398 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 ADIGQ0VDE8 80 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 ZNF662Q6ZS27 426 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 IRF2BP2Q7Z5L9 587 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 DEFB132Q7Z7B7 95 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 DDX53Q86TM3 631 aaKnown RBP14.41□□□□□ -0.1
CPSF1-212ENST00000616140 MREGQ8N565 214 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 TDRD5Q8NAT2 981 aaKnown RBP14.41□□□□□ -0.1
CPSF1-212ENST00000616140 SHC3Q92529 594 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 FBXO32Q969P5 355 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 PHF21BQ96EK2 531 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 ITGA11Q9UKX5 1188 aa14.41□□□□□ -0.1
CPSF1-212ENST00000616140 MROH2AA6NES4 1674 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 TRIM13O60858 407 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 USP12O75317 370 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 VPS26AO75436 327 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 FBXO21O94952 628 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 MGAT1P26572 445 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 HOXA10P31260 410 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 ZNF177Q13360 481 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 GALNTL6Q49A17 601 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 REPS2Q8NFH8 660 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 ADAM32Q8TC27 787 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 BTBD10Q9BSF8 475 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 NT5MQ9NPB1 228 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 THAP1Q9NVV9 213 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 FAM198AQ9UFP1 575 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 PNMA8BQ9ULN7 279 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 A0A096LPK6 155 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 ERI2A8K979 691 aaKnown RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 MICAL2O94851 1124 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 FSBPO95073 299 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 RBP1P09455 135 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 AKAP5P24588 427 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 SLC11A2P49281 568 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 DDR1Q08345 913 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 EFEMP1Q12805 493 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 TDRD10Q5VZ19 366 aaKnown RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 TIGD7Q6NT04 549 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 ILDR2Q71H61 639 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 FAM71AQ8IYT1 594 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 USP13Q92995 863 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 DTNBP1Q96EV8 351 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 OXNAD1Q96HP4 312 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 WDR18Q9BV38 432 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 MYLK2Q9H1R3 596 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 SH3BP1Q9Y3L3 701 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 SPATA31D1Q6ZQQ2 1576 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 ARHGEF28Q8N1W1 1705 aaKnown RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 WDR27A2RRH5 827 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 NCAM2O15394 837 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 ATP9AO75110 1047 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 H2AFYO75367 372 aaKnown RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 ETS1P14921 441 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 PEX5P50542 639 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 CDH18Q13634 790 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 TTLL9Q3SXZ7 439 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 PKN3Q6P5Z2 889 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 PTAR1Q7Z6K3 402 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 KYQ8NBH2 561 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 JADE3Q92613 823 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 PRCCQ92733 491 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 ZBTB10Q96DT7 871 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 PCDHB8Q9UN66 801 aa14.4□□□□□ -0.1
CPSF1-212ENST00000616140 COL5A2P05997 1499 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-212ENST00000616140 PIAS1O75925 651 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 CLPTM1O96005 669 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 MRPS15P82914 257 aaKnown RBP14.39□□□□□ -0.11
CPSF1-212ENST00000616140 CNGA2Q16280 664 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 ALG3Q92685 438 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 SCN3BQ9NY72 215 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 PCYOX1Q9UHG3 505 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 KIF20BQ96Q89 1820 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 PPLO60437 1756 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 E7ENQ6 273 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 RNF103O00237 685 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 DCXO43602 365 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 ALDH1A3P47895 512 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 SLC1A6P48664 564 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 TJAP1Q5JTD0 557 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 CCDC81Q6ZN84 652 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 ZBTB49Q6ZSB9 765 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 VSIG10LQ86VR7 867 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 CKAP2Q8WWK9 683 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 APBB2Q92870 758 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 ZMAT2Q96NC0 199 aaKnown RBP14.39□□□□□ -0.11
CPSF1-212ENST00000616140 HSD17B14Q9BPX1 270 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 ATXN3LQ9H3M9 355 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 DDX43Q9NXZ2 648 aaKnown RBP14.39□□□□□ -0.11
CPSF1-212ENST00000616140 NDUFA13Q9P0J0 144 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 SPASTQ9UBP0 616 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 C15orf41Q9Y2V0 281 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 LACTBL1A8MY62 500 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 NR5A2O00482 541 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 GTF2BQ00403 316 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 CHRNB3Q05901 458 aa14.39□□□□□ -0.11
CPSF1-212ENST00000616140 DPYSL3Q14195 570 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms