RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 USP49Q70CQ1 688 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 UNC13DQ70J99 1090 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 TMPRSS7Q7RTY8 843 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 ANKS1BQ7Z6G8 1248 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 C12orf40Q86WS4 652 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 SLC41A1Q8IVJ1 513 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 SCUBE3Q8IX30 993 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 CRYBG2Q8N1P7 616 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 CCDC150Q8NCX0 1101 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 LSM14AQ8ND56 463 aaKnown RBP6.63□□□□□ -1.35
CUX1-220ENST00000607092 TMEM174Q8WUU8 243 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 GOLGA1Q92805 767 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 SIPA1Q96FS4 1042 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 TOE1Q96GM8 510 aaKnown RBP6.63□□□□□ -1.35
CUX1-220ENST00000607092 FAXDC2Q96IV6 333 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 MRGPRX1Q96LB2 322 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 ZNF396Q96N95 335 aaPredicted RBP6.63□□□□□ -1.35
CUX1-220ENST00000607092 EPAS1Q99814 870 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 IRX2Q9BZI1 471 aaPredicted RBP6.63□□□□□ -1.35
CUX1-220ENST00000607092 TRIM9Q9C026 710 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 IKZF4Q9H2S9 585 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 CCSER2Q9H7U1 834 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 CSNK1G1Q9HCP0 422 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 KRT82Q9NSB4 513 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 KBTBD4Q9NVX7 518 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 WSB2Q9NYS7 404 aaPredicted RBP6.63□□□□□ -1.35
CUX1-220ENST00000607092 CLIC5Q9NZA1 410 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 DNMT3LQ9UJW3 386 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 RALYQ9UKM9 306 aaKnown RBP6.63□□□□□ -1.35
CUX1-220ENST00000607092 PCOLCE2Q9UKZ9 415 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 STRIP2Q9ULQ0 834 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 SCML2Q9UQR0 700 aa6.63□□□□□ -1.35
CUX1-220ENST00000607092 MYO16Q9Y6X6 1858 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 PVALEFA0A1B0GWK0 134 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 METTL12A8MUP2 240 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 TK2O00142 265 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 IKBKBO14920 756 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 TNFSF14O43557 240 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 HCRTO43612 131 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 C7P10643 843 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 IRF1P10914 325 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 RARGP13631 454 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 HNF1BP35680 557 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 WASP42768 502 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 CYP2J2P51589 502 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 MYL6P60660 151 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 CLDN10P78369 228 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 MESP2Q0VG99 397 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 CCDC142Q17RM4 750 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 TSR1Q2NL82 804 aaKnown RBP6.62□□□□□ -1.35
CUX1-220ENST00000607092 C10orf120Q5SQS8 335 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 EPM2AIP1Q7L775 607 aaPredicted RBP6.62□□□□□ -1.35
CUX1-220ENST00000607092 TMPRSS6Q8IU80 811 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 SLC9A9Q8IVB4 645 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 ZCCHC9Q8N567 271 aaKnown RBP6.62□□□□□ -1.35
CUX1-220ENST00000607092 FRMD1Q8N878 549 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 RDH13Q8NBN7 331 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 GLIS3Q8NEA6 775 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 SCAMP5Q8TAC9 235 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 SLC2A14Q8TDB8 520 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 RHBDD1Q8TEB9 315 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 WFIKKN2Q8TEU8 576 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 INTS4Q96HW7 963 aaKnown RBP6.62□□□□□ -1.35
CUX1-220ENST00000607092 PCMTD1Q96MG8 357 aaPredicted RBP6.62□□□□□ -1.35
CUX1-220ENST00000607092 KCNK16Q96T55 309 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 C7orf25Q9BPX7 421 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 GPR174Q9BXC1 333 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 KLF16Q9BXK1 252 aaPredicted RBP6.62□□□□□ -1.35
CUX1-220ENST00000607092 XYLT2Q9H1B5 865 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 MIR1-1HGQ9H1L0 117 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 GAREM1Q9H706 876 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 CYP3A43Q9HB55 503 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 CD248Q9HCU0 757 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 TM7SF3Q9NS93 570 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 CACNA2D2Q9NY47 1150 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 GMIPQ9P107 970 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 USP36Q9P275 1121 aaKnown RBP6.62□□□□□ -1.35
CUX1-220ENST00000607092 THAP10Q9P2Z0 257 aaPredicted RBP6.62□□□□□ -1.35
CUX1-220ENST00000607092 FBXO10Q9UK96 956 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 SCML1Q9UN30 329 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 PLA2G4CQ9UP65 541 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 PCDHGA10Q9Y5H3 936 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 CLIC4Q9Y696 253 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 STON1Q9Y6Q2 735 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 TNRC6BQ9UPQ9 1833 aaKnown RBP6.62□□□□□ -1.35
CUX1-220ENST00000607092 WDFY3Q8IZQ1 3526 aa6.62□□□□□ -1.35
CUX1-220ENST00000607092 HECTD1Q9ULT8 2610 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 PTPRDP23468 1912 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 A0A087WV48 116 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 PRRT4C9JH25 899 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 CLDN5O00501 218 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 SCAMP3O14828 347 aaKnown RBP6.61□□□□□ -1.35
CUX1-220ENST00000607092 YKT6O15498 198 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 PCDHGA12O60330 932 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 RNASEH1O60930 286 aaKnown RBP6.61□□□□□ -1.35
CUX1-220ENST00000607092 CBFA2T3O75081 653 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 PPP6R2O75170 966 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 CILPO75339 1184 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 PENKP01210 267 aaPredicted RBP6.61□□□□□ -1.35
CUX1-220ENST00000607092 CAPNS1P04632 268 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms