RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 STRIP2Q9ULQ0 834 aa15.82■□□□□ 0.12
TRIM28-205ENST00000595028 NFE2L3Q9Y4A8 694 aa15.82■□□□□ 0.12
TRIM28-205ENST00000595028 MYO18AQ92614 2054 aaKnown RBP15.82■□□□□ 0.12
TRIM28-205ENST00000595028 K7EQS6 105 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 TULP3O75386 442 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 LETM1O95202 739 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-205ENST00000595028 APODP05090 189 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 CHRM1P11229 460 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-205ENST00000595028 GNA15P30679 374 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 HOXC13P31276 330 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 SPEGQ15772 3267 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 ARHGAP44Q17R89 818 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 BSPRYQ5W0U4 402 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 ZFYVE26Q68DK2 2539 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 HEATR6Q6AI08 1181 aaKnown RBP15.81■□□□□ 0.12
TRIM28-205ENST00000595028 SMYD5Q6GMV2 418 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 SYT13Q7L8C5 426 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 LONP2Q86WA8 852 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 ENOX1Q8TC92 643 aaKnown RBP15.81■□□□□ 0.12
TRIM28-205ENST00000595028 USP33Q8TEY7 942 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 IRGQQ8WZA9 623 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 DCLK3Q9C098 648 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 ACP6Q9NPH0 428 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 AJAP1Q9UKB5 411 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-205ENST00000595028 SLC8A2Q9UPR5 921 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 ZNF510Q9Y2H8 683 aa15.81■□□□□ 0.12
TRIM28-205ENST00000595028 SLC12A8A0AV02 714 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 NEDD8-MDP1E9PL57 170 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 PIK3R2O00459 728 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 THAP12O43422 761 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 MED7O43513 233 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 CACNG3O60359 315 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 FBXO21O94952 628 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 KLKB1P03952 638 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 HMBSP08397 361 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 CORO1AP31146 461 aaKnown RBP15.8■□□□□ 0.12
TRIM28-205ENST00000595028 USP8P40818 1118 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 GRIA2P42262 883 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 GPD2P43304 727 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 RPL34P49207 117 aaKnown RBP15.8■□□□□ 0.12
TRIM28-205ENST00000595028 SEC13P55735 322 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 STX1AQ16623 288 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 TCP11X2Q5H9J9 407 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 CCDC183Q5T5S1 534 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 CDKAL1Q5VV42 579 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 DENND1BQ6P3S1 775 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 SFTPA1Q8IWL2 248 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 RNF139Q8WU17 664 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 ZNF606Q8WXB4 792 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 EDEM1Q92611 657 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 PLD4Q96BZ4 506 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 HHIPQ96QV1 700 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 BBS2Q9BXC9 721 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 ABCC13Q9NSE7 274 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 POLR3BQ9NW08 1133 aaPredicted RBP15.8■□□□□ 0.12
TRIM28-205ENST00000595028 DNAJC12Q9UKB3 198 aa15.8■□□□□ 0.12
TRIM28-205ENST00000595028 CNOT1A5YKK6 2376 aaKnown RBP15.79■□□□□ 0.12
TRIM28-205ENST00000595028 A0A0A0MRY4 1105 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 ANTXRLA6NF34 631 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 TYRP14679 529 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 DMC1Q14565 340 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 C2orf27AQ580R0 203 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 GRAMD4Q6IC98 578 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 DPY19L2P1Q6NXN4 242 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 MSANTD2Q6P1R3 559 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 SASS6Q6UVJ0 657 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 TPGS1Q6ZTW0 290 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 C11orf57Q6ZUT1 292 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-205ENST00000595028 WDR5BQ86VZ2 330 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 FMNL3Q8IVF7 1028 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 CAMKK1Q8N5S9 505 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 NAT16Q8N8M0 369 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 TERB1Q8NA31 727 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 CLEC4CQ8WTT0 213 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 ST7Q9NRC1 585 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 DNAJC17Q9NVM6 304 aaKnown RBP15.79■□□□□ 0.12
TRIM28-205ENST00000595028 ANO10Q9NW15 660 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 TAB2Q9NYJ8 693 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 WDR35Q9P2L0 1181 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 DEC1Q9P2X7 70 aa15.79■□□□□ 0.12
TRIM28-205ENST00000595028 AGO1Q9UL18 857 aaKnown RBP15.79■□□□□ 0.12
TRIM28-205ENST00000595028 HBS1LQ9Y450 684 aaKnown RBP15.79■□□□□ 0.12
TRIM28-205ENST00000595028 CCDC163A0A0D9SF12 145 aa15.78■□□□□ 0.12
TRIM28-205ENST00000595028 PES1O00541 588 aaKnown RBP15.78■□□□□ 0.12
TRIM28-205ENST00000595028 SLC30A4O14863 429 aa15.78■□□□□ 0.12
TRIM28-205ENST00000595028 SART1O43290 800 aaKnown RBP15.78■□□□□ 0.12
TRIM28-205ENST00000595028 LTFP02788 710 aa15.78■□□□□ 0.12
TRIM28-205ENST00000595028 CNR2P34972 360 aa15.78■□□□□ 0.12
TRIM28-205ENST00000595028 MRPS21P82921 87 aaKnown RBP15.78■□□□□ 0.12
TRIM28-205ENST00000595028 PDCLQ13371 301 aa15.78■□□□□ 0.12
TRIM28-205ENST00000595028 TRIP4Q15650 581 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-205ENST00000595028 PREPLQ4J6C6 727 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-205ENST00000595028 DENND1CQ8IV53 801 aa15.78■□□□□ 0.12
TRIM28-205ENST00000595028 STK32AQ8WU08 396 aa15.78■□□□□ 0.12
TRIM28-205ENST00000595028 GOLGA1Q92805 767 aa15.78■□□□□ 0.12
TRIM28-205ENST00000595028 XPO6Q96QU8 1125 aaKnown RBP15.78■□□□□ 0.12
TRIM28-205ENST00000595028 SLC4A5Q9BY07 1137 aa15.78■□□□□ 0.12
TRIM28-205ENST00000595028 SFMBT1Q9UHJ3 866 aa15.78■□□□□ 0.12
TRIM28-205ENST00000595028 CYTH4Q9UIA0 394 aa15.78■□□□□ 0.12
TRIM28-205ENST00000595028 GMEB2Q9UKD1 530 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms