RNA–Protein interactions for RNA: ENST00000591534.5

BRCA1-226, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-226ENST00000591534 LYSMD4Q5XG99 296 aa9.98□□□□□ -0.81
BRCA1-226ENST00000591534 SCARA3Q6AZY7 606 aa9.98□□□□□ -0.81
BRCA1-226ENST00000591534 RHBDF2Q6PJF5 856 aa9.98□□□□□ -0.81
BRCA1-226ENST00000591534 UNQ6494/PRO21346Q6UXR6 183 aa9.98□□□□□ -0.81
BRCA1-226ENST00000591534 ELOA2Q8IYF1 753 aaPredicted RBP9.98□□□□□ -0.81
BRCA1-226ENST00000591534 HDDC3Q8N4P3 179 aa9.98□□□□□ -0.81
BRCA1-226ENST00000591534 IL17RCQ8NAC3 791 aa9.98□□□□□ -0.81
BRCA1-226ENST00000591534 HMGB4Q8WW32 186 aa9.98□□□□□ -0.81
BRCA1-226ENST00000591534 SMARCD1Q96GM5 515 aa9.98□□□□□ -0.81
BRCA1-226ENST00000591534 XPO6Q96QU8 1125 aaKnown RBP9.98□□□□□ -0.81
BRCA1-226ENST00000591534 C7orf25Q9BPX7 421 aa9.98□□□□□ -0.81
BRCA1-226ENST00000591534 MRPL45Q9BRJ2 306 aaKnown RBP9.98□□□□□ -0.81
BRCA1-226ENST00000591534 C2orf49Q9BVC5 232 aaPredicted RBP9.98□□□□□ -0.81
BRCA1-226ENST00000591534 DMAP1Q9NPF5 467 aaPredicted RBP9.98□□□□□ -0.81
BRCA1-226ENST00000591534 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.98□□□□□ -0.814e-6■■■■■ 85.3
BRCA1-226ENST00000591534 PTPRJQ12913 1337 aa9.98□□□□□ -0.81
BRCA1-226ENST00000591534 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 PVALEFA0A1B0GWK0 134 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 TCRBV21S2A2A0A5A6 115 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 H0Y626 953 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 SGK1O00141 431 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 HOXC11O43248 304 aaPredicted RBP9.97□□□□□ -0.81
BRCA1-226ENST00000591534 TRIM16O95361 564 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 BCKDHBP21953 392 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 SLC6A11P48066 632 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 IRX4P78413 519 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 PRR20EP86478 221 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 PRR20CP86479 221 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 PRR20DP86480 221 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 PRR20BP86481 221 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 PRR20AP86496 221 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 ZXDBP98169 803 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 KDSRQ06136 332 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 GFPT1Q06210 699 aaPredicted RBP9.97□□□□□ -0.81
BRCA1-226ENST00000591534 DUOXA1Q1HG43 343 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 ANO4Q32M45 955 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 ZNF699Q32M78 642 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 ZNF667Q5HYK9 610 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 LY6G5CQ5SRR4 150 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 SLC23A3Q6PIS1 610 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 UNC13DQ70J99 1090 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 EPM2AIP1Q7L775 607 aaPredicted RBP9.97□□□□□ -0.81
BRCA1-226ENST00000591534 TADA2BQ86TJ2 420 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 C12orf56Q8IXR9 622 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 TMEFF1Q8IYR6 380 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 GRAMD1CQ8IYS0 662 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 ZNF513Q8N8E2 541 aaPredicted RBP9.97□□□□□ -0.81
BRCA1-226ENST00000591534 ZDHHC1Q8WTX9 485 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 DHX58Q96C10 678 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 B3GNT5Q9BYG0 378 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 ZNF518BQ9C0D4 1074 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 TLR8Q9NR97 1041 aaKnown RBP9.97□□□□□ -0.81
BRCA1-226ENST00000591534 SPHK2Q9NRA0 654 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 WDR35Q9P2L0 1181 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 CHORDC1Q9UHD1 332 aaPredicted RBP9.97□□□□□ -0.81
BRCA1-226ENST00000591534 LSM7Q9UK45 103 aaKnown RBP9.97□□□□□ -0.81
BRCA1-226ENST00000591534 CHD8Q9HCK8 2581 aa9.97□□□□□ -0.81
BRCA1-226ENST00000591534 GREB1Q4ZG55 1949 aa9.96□□□□□ -0.81
BRCA1-226ENST00000591534 RALGAPA1Q6GYQ0 2036 aa9.96□□□□□ -0.81
BRCA1-226ENST00000591534 UPK3BL1B0FP48 263 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 UPK3BL2E5RIL1 263 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 CDX4O14627 284 aaPredicted RBP9.96□□□□□ -0.82
BRCA1-226ENST00000591534 CLIC2O15247 247 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 TGFB1I1O43294 461 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 COCHO43405 550 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 RPN1P04843 607 aaKnown RBP9.96□□□□□ -0.82
BRCA1-226ENST00000591534 CFIP05156 583 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 MYL1P05976 194 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 SYPP08247 313 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 NTSR1P30989 418 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 KIR2DL1P43626 348 aaPredicted RBP9.96□□□□□ -0.82
BRCA1-226ENST00000591534 SLC5A3P53794 718 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 MYL6P60660 151 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 RPL6Q02878 288 aaKnown RBP9.96□□□□□ -0.82
BRCA1-226ENST00000591534 KNOP1Q1ED39 458 aaKnown RBP9.96□□□□□ -0.82
BRCA1-226ENST00000591534 SGSM1Q2NKQ1 1148 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 GAB4Q2WGN9 574 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 C10orf76Q5T2E6 689 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 SYCP2LQ5T4T6 812 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 CCDC183Q5T5S1 534 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 GRAMD4Q6IC98 578 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 NELFCDQ8IXH7 590 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 SCFD1Q8WVM8 642 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 RLN3Q8WXF3 142 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 TAF4BQ92750 862 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 TIGD1Q96MW7 591 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 BLZF1Q9H2G9 400 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 DPEP3Q9H4B8 488 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 FAM124BQ9H5Z6 455 aaPredicted RBP9.96□□□□□ -0.82
BRCA1-226ENST00000591534 LMBRD1Q9NUN5 540 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 SLC6A14Q9UN76 642 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 LAMA1P25391 3075 aa9.96□□□□□ -0.82
BRCA1-226ENST00000591534 KIF26AQ9ULI4 1882 aaPredicted RBP9.96□□□□□ -0.82
BRCA1-226ENST00000591534 ZFHX4Q86UP3 3567 aa9.95□□□□□ -0.82
BRCA1-226ENST00000591534 PATE3B3GLJ2 98 aa9.95□□□□□ -0.82
BRCA1-226ENST00000591534 CLDN5O00501 218 aa9.95□□□□□ -0.82
BRCA1-226ENST00000591534 GIPC1O14908 333 aa9.95□□□□□ -0.82
BRCA1-226ENST00000591534 POLR2DO15514 142 aaKnown RBP9.95□□□□□ -0.82
BRCA1-226ENST00000591534 OPHN1O60890 802 aa9.95□□□□□ -0.82
BRCA1-226ENST00000591534 NDUFS2O75306 463 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms