RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 NACA2Q9H009 215 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 ATXN3LQ9H3M9 355 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 DDX56Q9NY93 547 aaKnown RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 MARCH2Q9P0N8 246 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 DNMT3LQ9UJW3 386 aa11.19□□□□□ -0.62
SS18-213ENST00000579640 HBS1LQ9Y450 684 aaKnown RBP11.19□□□□□ -0.62
SS18-213ENST00000579640 CHD7Q9P2D1 2997 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 OBSL1O75147 1896 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 ENC1O14682 589 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 OLFM2O95897 454 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 ATP1A1P05023 1023 aaKnown RBP11.18□□□□□ -0.62
SS18-213ENST00000579640 SLC2A3P11169 496 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 TCP1P17987 556 aaKnown RBP11.18□□□□□ -0.62
SS18-213ENST00000579640 TFE3P19532 575 aaPredicted RBP11.18□□□□□ -0.62
SS18-213ENST00000579640 CXCR3P49682 368 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 TAS2R40P59535 323 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 PITX1P78337 314 aaPredicted RBP11.18□□□□□ -0.62
SS18-213ENST00000579640 RBM10P98175 930 aaKnown RBP11.18□□□□□ -0.62
SS18-213ENST00000579640 EFEMP1Q12805 493 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 NME3Q13232 169 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 ADGRE1Q14246 886 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 TRIP4Q15650 581 aaPredicted RBP11.18□□□□□ -0.62
SS18-213ENST00000579640 ARL13BQ3SXY8 428 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 ARHGAP15Q53QZ3 475 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 BRMS1LQ5PSV4 323 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 SCYL2Q6P3W7 929 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 CPNE8Q86YQ8 564 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 TEKT4Q8WW24 435 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 NTAN1Q96AB6 310 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 LRCH3Q96II8 777 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 ADAM33Q9BZ11 813 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 CCSER2Q9H7U1 834 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 WDR6Q9NNW5 1121 aaKnown RBP11.18□□□□□ -0.62
SS18-213ENST00000579640 PIGVQ9NUD9 493 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.18□□□□□ -0.62
SS18-213ENST00000579640 SFMBT1Q9UHJ3 866 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 RASAL2Q9UJF2 1139 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 PACSIN2Q9UNF0 486 aaPredicted RBP11.18□□□□□ -0.62
SS18-213ENST00000579640 TLR6Q9Y2C9 796 aa11.18□□□□□ -0.62
SS18-213ENST00000579640 DENND4CQ5VZ89 1909 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 ANAPC1Q9H1A4 1944 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 MDM4O15151 490 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 DDX3YO15523 660 aaKnown RBP11.17□□□□□ -0.62
SS18-213ENST00000579640 IGFBP4P22692 258 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 CCR1P32246 355 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 PEX5P50542 639 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 RWDD2BP57060 319 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 TBX4P57082 545 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 COG7P83436 770 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 RING1Q06587 406 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 PPP2R5DQ14738 602 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 COL19A1Q14993 1142 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 CTC1Q2NKJ3 1217 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 PRSS36Q5K4E3 855 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 DNTTIP2Q5QJE6 756 aaKnown RBP11.17□□□□□ -0.62
SS18-213ENST00000579640 GRASPQ7Z6J2 395 aaPredicted RBP11.17□□□□□ -0.62
SS18-213ENST00000579640 GPR149Q86SP6 731 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 KATNAL2Q8IYT4 538 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 SHKBP1Q8TBC3 707 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 ADAM32Q8TC27 787 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 ZNF592Q92610 1267 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 CARD9Q9H257 536 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 WDCPQ9H6R7 721 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.17□□□□□ -0.62
SS18-213ENST00000579640 HCFC1R1Q9NWW0 138 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 CALCOCO1Q9P1Z2 691 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 PCSK1NQ9UHG2 260 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 NUDT5Q9UKK9 219 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 SNX12Q9UMY4 172 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 SAR1BQ9Y6B6 198 aa11.17□□□□□ -0.62
SS18-213ENST00000579640 LAMA2P24043 3122 aaKnown RBP11.17□□□□□ -0.62
SS18-213ENST00000579640 SYNJ2BP-COX16A0A087WUM0 186 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 TRAV19A0A0A6YYK7 116 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 A0A1W2PRU2 124 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 SLC12A8A0AV02 714 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 CES2O00748 559 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 FANCGO15287 622 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 LINC01565O15544 149 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 COCHO43405 550 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 TBX18O95935 607 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 IL1R2P27930 398 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 CYP4F8P98187 520 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 ITIH3Q06033 890 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 SCAPQ12770 1279 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 TUBB2AQ13885 445 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 ODF2Q5BJF6 829 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 RARS2Q5T160 578 aaKnown RBP11.16□□□□□ -0.62
SS18-213ENST00000579640 ERMARDQ5T6L9 678 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 ACBD5Q5T8D3 534 aaPredicted RBP11.16□□□□□ -0.62
SS18-213ENST00000579640 DAB2IPQ5VWQ8 1189 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 TMC5Q6UXY8 1006 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 FAM131BQ86XD5 332 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 C12orf76Q8N812 135 aaPredicted RBP11.16□□□□□ -0.62
SS18-213ENST00000579640 EXD1Q8NHP7 514 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 KRT35Q92764 455 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 RNF34Q969K3 372 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 PLD4Q96BZ4 506 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 SLC39A13Q96H72 371 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 RBM41Q96IZ5 413 aaKnown RBP11.16□□□□□ -0.62
SS18-213ENST00000579640 PBKQ96KB5 322 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms