RNA–Protein interactions for RNA: ENST00000579466.1

MSI2-208, Transcript of musashi RNA binding protein 2, human

TSL 3

Gene MSI2, Length 186 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-208	ENST00000579466	EFEMP1	Q12805	493 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	HNRNPD	Q14103	355 aa	Known RBP	10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	GEN1	Q17RS7	908 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	KNOP1	Q1ED39	458 aa	Known RBP	10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	DCAF12L1	Q5VU92	463 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	CEP135	Q66GS9	1140 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	PARD3B	Q8TEW8	1205 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	HNRNPLL	Q8WVV9	542 aa	Known RBP	10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	SORCS1	Q8WY21	1168 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	FOXJ1	Q92949	421 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	ZNF419	Q96HQ0	510 aa	Predicted RBP	10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	C7orf25	Q9BPX7	421 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	CCDC86	Q9H6F5	360 aa	Known RBP	10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	GAREM1	Q9H706	876 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	VRTN	Q9H8Y1	702 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	CYLD	Q9NQC7	956 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	COMMD8	Q9NX08	183 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	MARK1	Q9P0L2	795 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466	IGSF10	Q6WRI0	2623 aa		10.13	□□□□□ -0.79
MSI2-208	ENST00000579466		A0A1B0GTW7	788 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	CUTA	O60888	179 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	PPP6R2	O75170	966 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	STC2	O76061	302 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	HLA-DRA	P01903	254 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	CISD3	P0C7P0	127 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	MFAP3	P55082	362 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	SNRPF	P62306	86 aa	Known RBP	10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	BMT2	Q1RMZ1	405 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	SGSM1	Q2NKQ1	1148 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	ZNF394	Q53GI3	561 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466		Q6ZNB5	142 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	SLCO6A1	Q86UG4	719 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	PDZD3	Q86UT5	571 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	TMPRSS6	Q8IU80	811 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	C12orf56	Q8IXR9	622 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	ADAMTS14	Q8WXS8	1223 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	CYFIP2	Q96F07	1278 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	ZNF396	Q96N95	335 aa	Predicted RBP	10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	CIPC	Q9C0C6	399 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	CSNK1G1	Q9HCP0	422 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	WSB2	Q9NYS7	404 aa	Predicted RBP	10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	EIF2B4	Q9UI10	523 aa	Known RBP	10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	DNMT3L	Q9UJW3	386 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	SCML2	Q9UQR0	700 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	APOBEC2	Q9Y235	224 aa	Known RBP	10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	FNDC3A	Q9Y2H6	1198 aa	Known RBP	10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	RAX	Q9Y2V3	346 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	GPSM3	Q9Y4H4	160 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466	CELSR3	Q9NYQ7	3312 aa		10.12	□□□□□ -0.79
MSI2-208	ENST00000579466		A0A1B0GVT2	93 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	HHLA1	C9JL84	531 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	GFRA2	O00451	464 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	BCAT2	O15382	392 aa	Predicted RBP	10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	SYNCRIP	O60506	623 aa	Known RBP	10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	CILP	O75339	1184 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	KLKB1	P03952	638 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	NR3C1	P04150	777 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	EPHX1	P07099	455 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	TRIM49	P0CI25	452 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	TRIM49C	P0CI26	452 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	ACADM	P11310	421 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	HLA-E	P13747	358 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	TRIM21	P19474	475 aa	Known RBP	10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	PRKCH	P24723	683 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	CORO1A	P31146	461 aa	Known RBP	10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	MATK	P42679	507 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	PLA2G4A	P47712	749 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	TPMT	P51580	245 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	AP3M2	P53677	418 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	ARID5A	Q03989	594 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	STK4	Q13043	487 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	SLC14A1	Q13336	389 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	ZNF234	Q14588	700 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	LAYN	Q6UX15	382 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	SERPINA13P	Q6UXR4	307 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	SV2A	Q7L0J3	742 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	SCD5	Q86SK9	330 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	UNC93A	Q86WB7	457 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	DENND1C	Q8IV53	801 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	CRYBG2	Q8N1P7	616 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	ZNF366	Q8N895	744 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	KIAA0895	Q8NCT3	520 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	UCMA	Q8WVF2	138 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	PRCC	Q92733	491 aa	Predicted RBP	10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	SIPA1	Q96FS4	1042 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	DUSP9	Q99956	384 aa	Known RBP	10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	TM7SF3	Q9NS93	570 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	EXOC1	Q9NV70	894 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	USP36	Q9P275	1121 aa	Known RBP	10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	CGN	Q9P2M7	1197 aa	Known RBP	10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	PCOLCE2	Q9UKZ9	415 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	CLEC4E	Q9ULY5	219 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	PCDHA5	Q9Y5H7	936 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	SLCO1B1	Q9Y6L6	691 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	MORC2	Q9Y6X9	1032 aa	Predicted RBP	10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	GCN1	Q92616	2671 aa	Known RBP	10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	CABIN1	Q9Y6J0	2220 aa		10.11	□□□□□ -0.79
MSI2-208	ENST00000579466	FAM149A	A5PLN7	773 aa		10.1	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms