RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 LILRB5O75023 590 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 PPP2R5DQ14738 602 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 NCAPHQ15003 741 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 TPGS1Q6ZTW0 290 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 FMNL3Q8IVF7 1028 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 ETFBKMTQ8IXQ9 262 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 FAM71AQ8IYT1 594 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 PHTF2Q8N3S3 785 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 STK32AQ8WU08 396 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 ATRIPQ8WXE1 791 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 IRGQQ8WZA9 623 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 NAA15Q9BXJ9 866 aaKnown RBP15.73■□□□□ 0.11
VPS39-210ENST00000568357 SLC4A5Q9BY07 1137 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 FAM126AQ9BYI3 521 aaPredicted RBP15.73■□□□□ 0.11
VPS39-210ENST00000568357 HSD3B7Q9H2F3 369 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 ST7Q9NRC1 585 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 ABCC13Q9NSE7 274 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 NCDNQ9UBB6 729 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 PCDHGA2Q9Y5H1 932 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 FHOD1Q9Y613 1164 aa15.73■□□□□ 0.11
VPS39-210ENST00000568357 DCDC2BA2VCK2 349 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 TRIM24O15164 1050 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 ATG13O75143 517 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 TULP3O75386 442 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 KAT7O95251 611 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 FYNP06241 537 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 CORO1AP31146 461 aaKnown RBP15.72■□□□□ 0.11
VPS39-210ENST00000568357 EIF2DP41214 584 aaKnown RBP15.72■□□□□ 0.11
VPS39-210ENST00000568357 SEC13P55735 322 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 MYL5Q02045 173 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 PTK2Q05397 1052 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 TYRO3Q06418 890 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 DRAP1Q14919 205 aaPredicted RBP15.72■□□□□ 0.11
VPS39-210ENST00000568357 MEA1Q16626 185 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 EMC10Q5UCC4 262 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 CAVIN1Q6NZI2 390 aaKnown RBP15.72■□□□□ 0.11
VPS39-210ENST00000568357 TMEM110Q86TL2 294 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 SLC47A2Q86VL8 602 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 DENND1CQ8IV53 801 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 RPLP0P6Q8NHW5 317 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 USP33Q8TEY7 942 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 RNF139Q8WU17 664 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 LSM14BQ9BX40 385 aaKnown RBP15.72■□□□□ 0.11
VPS39-210ENST00000568357 OLA1Q9NTK5 396 aaKnown RBP15.72■□□□□ 0.11
VPS39-210ENST00000568357 AGO1Q9UL18 857 aaKnown RBP15.72■□□□□ 0.11
VPS39-210ENST00000568357 STRIP2Q9ULQ0 834 aa15.72■□□□□ 0.11
VPS39-210ENST00000568357 PAPSS1O43252 624 aaPredicted RBP15.71■□□□□ 0.11
VPS39-210ENST00000568357 FBXO21O94952 628 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 LTFP02788 710 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 ADRB1P08588 477 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 CHRM1P11229 460 aaPredicted RBP15.71■□□□□ 0.11
VPS39-210ENST00000568357 UCHL3P15374 230 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 GRIA2P42262 883 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 FNTBP49356 437 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 KLK7P49862 253 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 NRLP54845 237 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 KDSRQ06136 332 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 RAPGEF1Q13905 1077 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 TRIP4Q15650 581 aaPredicted RBP15.71■□□□□ 0.11
VPS39-210ENST00000568357 C2orf27AQ580R0 203 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 HEATR6Q6AI08 1181 aaKnown RBP15.71■□□□□ 0.11
VPS39-210ENST00000568357 SMYD5Q6GMV2 418 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 BBS2Q9BXC9 721 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 DCLK3Q9C098 648 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 ARHGEF4Q9NR80 690 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 MARK1Q9P0L2 795 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 WDR35Q9P2L0 1181 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 DEC1Q9P2X7 70 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 TJP2Q9UDY2 1190 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 LIMA1Q9UHB6 759 aaKnown RBP15.71■□□□□ 0.11
VPS39-210ENST00000568357 CDV3Q9UKY7 258 aaKnown RBP15.71■□□□□ 0.11
VPS39-210ENST00000568357 PCDHGC3Q9UN70 934 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 ZNF510Q9Y2H8 683 aa15.71■□□□□ 0.11
VPS39-210ENST00000568357 CHD8Q9HCK8 2581 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 LRRC10BA6NIK2 292 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 E5RJQ4 531 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 NEDD8-MDP1E9PL57 170 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 MSI1O43347 362 aaKnown RBP15.7■□□□□ 0.1
VPS39-210ENST00000568357 APODP05090 189 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 TYRP14679 529 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 ZNF18P17022 549 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 HOXA6P31267 233 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 ACADSBP45954 432 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 PXNP49023 591 aaPredicted RBP15.7■□□□□ 0.1
VPS39-210ENST00000568357 COPB1P53618 953 aaKnown RBP15.7■□□□□ 0.1
VPS39-210ENST00000568357 PDCLQ13371 301 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 MSANTD2Q6P1R3 559 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 SYT13Q7L8C5 426 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 APTXQ7Z2E3 356 aaKnown RBP15.7■□□□□ 0.1
VPS39-210ENST00000568357 PASD1Q8IV76 773 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 BHMTQ93088 406 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 PLD4Q96BZ4 506 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 LHX5Q9H2C1 402 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 PLK2Q9NYY3 685 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 SLC8A2Q9UPR5 921 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 NAALADL1Q9UQQ1 740 aa15.7■□□□□ 0.1
VPS39-210ENST00000568357 HBS1LQ9Y450 684 aaKnown RBP15.7■□□□□ 0.1
VPS39-210ENST00000568357 MYO16Q9Y6X6 1858 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 TBC1D3BA6NDS4 549 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms