RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 FAM90A8PA6NJQ4 464 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 VSTM5A8MXK1 200 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 B4DGG1 531 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 F8W810 466 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 PRPF4O43172 522 aaKnown RBP eCLIP3.41□□□□□ -1.86
VPS35-207ENST00000568191 CNOT3O75175 753 aaKnown RBP3.41□□□□□ -1.86
VPS35-207ENST00000568191 WDR47O94967 919 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 PLAUP00749 431 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 FAM90A13PP0C7W8 464 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 FAM90A24PP0C7X0 464 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 PSG1P11464 419 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 IL1R1P14778 569 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 ATF7P17544 494 aaPredicted RBP3.41□□□□□ -1.86
VPS35-207ENST00000568191 NTSR1P30989 418 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 CCKBRP32239 447 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 COPAP53621 1224 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 YPEL5P62699 121 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 DEUP1Q05D60 604 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 SRSF1Q07955 248 aaKnown RBP eCLIP3.41□□□□□ -1.86
VPS35-207ENST00000568191 DNASE1L3Q13609 305 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 KCNAB1Q14722 419 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 KPNB1Q14974 876 aaKnown RBP3.41□□□□□ -1.86
VPS35-207ENST00000568191 TRIM71Q2Q1W2 868 aaKnown RBP3.41□□□□□ -1.86
VPS35-207ENST00000568191 EARS2Q5JPH6 523 aaKnown RBP3.41□□□□□ -1.86
VPS35-207ENST00000568191 SESTD1Q86VW0 696 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 TTC30AQ86WT1 665 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 MMP21Q8N119 569 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.41□□□□□ -1.86
VPS35-207ENST00000568191 THOC3Q96J01 351 aaKnown RBP3.41□□□□□ -1.86
VPS35-207ENST00000568191 LYZL4Q96KX0 146 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 NLRP4Q96MN2 994 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 EIF3CQ99613 913 aaKnown RBP3.41□□□□□ -1.86
VPS35-207ENST00000568191 RNF26Q9BY78 433 aaPredicted RBP3.41□□□□□ -1.86
VPS35-207ENST00000568191 KRTAP1-5Q9BYS1 174 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 TRIM2Q9C040 744 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 FAM234AQ9H0X4 552 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 DECR2Q9NUI1 292 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 TMEM45AQ9NWC5 275 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 HEY2Q9UBP5 337 aa3.41□□□□□ -1.86
VPS35-207ENST00000568191 SIRT4Q9Y6E7 314 aaPredicted RBP3.41□□□□□ -1.86
VPS35-207ENST00000568191 AGPSO00116 658 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 CA12O43570 354 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 TSPAN6O43657 245 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 IL18RAPO95256 599 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 T-ENOLP0DO92 83 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 TFEBP19484 476 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 MATN1P21941 496 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 DUSP1P28562 367 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 GALNSP34059 522 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 ALDH7A1P49419 539 aaKnown RBP3.4□□□□□ -1.87
VPS35-207ENST00000568191 B4GALNT1Q00973 533 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 MTA1Q13330 715 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 MTX1Q13505 466 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 GBX1Q14549 363 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 SEMA3AQ14563 771 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 SEC23BQ15437 767 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 MIDNQ504T8 468 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 FAXCQ5TGI0 409 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 RUSC1-AS1Q66K80 236 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 KIAA1161Q6NSJ0 714 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 USP17L6PQ6QN14 398 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 BEND5Q7L4P6 421 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 KRT28Q7Z3Y7 464 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 MARK4Q96L34 752 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 FCRL5Q96RD9 977 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 SENP7Q9BQF6 1050 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 HTATIP2Q9BUP3 242 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 MAGEB5Q9BZ81 275 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 ASAP1Q9ULH1 1129 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 ZNF335Q9H4Z2 1342 aaPredicted RBP3.4□□□□□ -1.87
VPS35-207ENST00000568191 CNTNAP2Q9UHC6 1331 aa3.4□□□□□ -1.87
VPS35-207ENST00000568191 IGLV5-39A0A0G2JS06 123 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 RHPN2P1A8MT19 583 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 AREL1O15033 823 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 PRAMEF2O60811 474 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 RHCEP18577 417 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 ATF3P18847 181 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 RPS6KB1P23443 525 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 TBXAS1P24557 533 aaPredicted RBP3.39□□□□□ -1.87
VPS35-207ENST00000568191 GSTM5P46439 218 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 VPS41P49754 854 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 RHDQ02161 417 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 GPS1Q13098 491 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 BFSP2Q13515 415 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 DAG1Q14118 895 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 ACOX1Q15067 660 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 GPR162Q16538 588 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 KLHL22Q53GT1 634 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 PDXDC1Q6P996 788 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 TLDC1Q6P9B6 456 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 B4GALNT4Q76KP1 1039 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 ANKRD13AQ8IZ07 590 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 ADGRF4Q8IZF3 695 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 SLC44A5Q8NCS7 719 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 SUN3Q8TAQ9 357 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 OVCA2Q8WZ82 227 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 PHKBQ93100 1093 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 SCNM1Q9BWG6 230 aa3.39□□□□□ -1.87
VPS35-207ENST00000568191 EIF2AQ9BY44 585 aaKnown RBP3.39□□□□□ -1.87
VPS35-207ENST00000568191 VPS45Q9NRW7 570 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms