RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 STRIP2Q9ULQ0 834 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 ZNF510Q9Y2H8 683 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 THADAQ6YHU6 1953 aa19.24■□□□□ 0.67
CLN3-214ENST00000565140 SGK1O00141 431 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 AXIN1O15169 862 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 ADAM23O75077 832 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 RPP40O75818 363 aaKnown RBP19.23■□□□□ 0.67
CLN3-214ENST00000565140 LETM1O95202 739 aaPredicted RBP19.23■□□□□ 0.67
CLN3-214ENST00000565140 KLF8O95600 359 aaPredicted RBP19.23■□□□□ 0.67
CLN3-214ENST00000565140 APBB3O95704 486 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 CISD3P0C7P0 127 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 MAN2A1Q16706 1144 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 MIIPQ5JXC2 388 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 LAIR1Q6GTX8 287 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 TOGARAM2Q6ZUX3 1019 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 CEP68Q76N32 757 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 ENOSF1Q7L5Y1 443 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 DENND1CQ8IV53 801 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 FAM160A2Q8N612 972 aaPredicted RBP19.23■□□□□ 0.67
CLN3-214ENST00000565140 TERB1Q8NA31 727 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 ZNF606Q8WXB4 792 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 HSFY1Q96LI6 401 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 DCLK3Q9C098 648 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 PARD6AQ9NPB6 346 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 SIX2Q9NPC8 291 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 ABCC13Q9NSE7 274 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 SAMSN1Q9NSI8 373 aaKnown RBP19.23■□□□□ 0.67
CLN3-214ENST00000565140 OLA1Q9NTK5 396 aaKnown RBP19.23■□□□□ 0.67
CLN3-214ENST00000565140 APEX2Q9UBZ4 518 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 EBF1Q9UH73 591 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 DACH1Q9UI36 760 aa19.23■□□□□ 0.67
CLN3-214ENST00000565140 AJAP1Q9UKB5 411 aaPredicted RBP19.23■□□□□ 0.67
CLN3-214ENST00000565140 RPL34P49207 117 aaKnown RBP19.22■□□□□ 0.67
CLN3-214ENST00000565140 TRIP4Q15650 581 aaPredicted RBP19.22■□□□□ 0.67
CLN3-214ENST00000565140 CRY1Q16526 586 aa19.22■□□□□ 0.67
CLN3-214ENST00000565140 C10orf76Q5T2E6 689 aa19.22■□□□□ 0.67
CLN3-214ENST00000565140 GRAMD4Q6IC98 578 aa19.22■□□□□ 0.67
CLN3-214ENST00000565140 FAM114A1Q8IWE2 563 aa19.22■□□□□ 0.67
CLN3-214ENST00000565140 SCUBE3Q8IX30 993 aa19.22■□□□□ 0.67
CLN3-214ENST00000565140 TSTD1Q8NFU3 115 aa19.22■□□□□ 0.67
CLN3-214ENST00000565140 RNF139Q8WU17 664 aa19.22■□□□□ 0.67
CLN3-214ENST00000565140 IRGQQ8WZA9 623 aa19.22■□□□□ 0.67
CLN3-214ENST00000565140 GBP4Q96PP9 640 aa19.22■□□□□ 0.67
CLN3-214ENST00000565140 XPO6Q96QU8 1125 aaKnown RBP19.22■□□□□ 0.67
CLN3-214ENST00000565140 TUBGCP2Q9BSJ2 902 aa19.22■□□□□ 0.67
CLN3-214ENST00000565140 MIS12Q9H081 205 aa19.22■□□□□ 0.67
CLN3-214ENST00000565140 CYTH4Q9UIA0 394 aa19.22■□□□□ 0.67
CLN3-214ENST00000565140 GMEB2Q9UKD1 530 aa19.22■□□□□ 0.67
CLN3-214ENST00000565140 PRRT4C9JH25 899 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 DCLK1O15075 740 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 MSI1O43347 362 aaKnown RBP19.21■□□□□ 0.67
CLN3-214ENST00000565140 THAP12O43422 761 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 RETP07949 1114 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 PRKCSHP14314 528 aaPredicted RBP19.21■□□□□ 0.67
CLN3-214ENST00000565140 GNA15P30679 374 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 USP8P40818 1118 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 DGKEP52429 567 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 SPEM2Q0P670 501 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 PREPLQ4J6C6 727 aaPredicted RBP19.21■□□□□ 0.67
CLN3-214ENST00000565140 VWA3BQ502W6 1294 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 FYB2Q5VWT5 728 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 DPY19L2P1Q6NXN4 242 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 KBTBD6Q86V97 674 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 SHC3Q92529 594 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 NUP205Q92621 2012 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 PLD4Q96BZ4 506 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 NDST4Q9H3R1 872 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 FBXO10Q9UK96 956 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 STARD13Q9Y3M8 1113 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 HBS1LQ9Y450 684 aaKnown RBP19.21■□□□□ 0.67
CLN3-214ENST00000565140 LAMA1P25391 3075 aa19.21■□□□□ 0.67
CLN3-214ENST00000565140 CACNA1AO00555 2505 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 GON4LQ3T8J9 2241 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 CEP192Q8TEP8 1941 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 PENKP01210 267 aaPredicted RBP19.2■□□□□ 0.66
CLN3-214ENST00000565140 LTFP02788 710 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 FYNP06241 537 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 CHKAP35790 457 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 HSF5Q4G112 596 aaPredicted RBP19.2■□□□□ 0.66
CLN3-214ENST00000565140 ANO7Q6IWH7 933 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 MSANTD2Q6P1R3 559 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 RBM43Q6ZSC3 357 aaKnown RBP19.2■□□□□ 0.66
CLN3-214ENST00000565140 CACNA2D4Q7Z3S7 1137 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.2■□□□□ 0.66
CLN3-214ENST00000565140 FAM217AQ8IXS0 508 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 ZNF513Q8N8E2 541 aaPredicted RBP19.2■□□□□ 0.66
CLN3-214ENST00000565140 FAM81BQ96LP2 452 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 SLC4A5Q9BY07 1137 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 TPSD1Q9BZJ3 242 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 ST7Q9NRC1 585 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 INVSQ9Y283 1065 aa19.2■□□□□ 0.66
CLN3-214ENST00000565140 KCNJ18B7U540 433 aa19.19■□□□□ 0.66
CLN3-214ENST00000565140 FOXN3O00409 490 aaPredicted RBP19.19■□□□□ 0.66
CLN3-214ENST00000565140 MED7O43513 233 aa19.19■□□□□ 0.66
CLN3-214ENST00000565140 FBXO21O94952 628 aa19.19■□□□□ 0.66
CLN3-214ENST00000565140 DGKGP49619 791 aa19.19■□□□□ 0.66
CLN3-214ENST00000565140 KCNMA1Q12791 1236 aa19.19■□□□□ 0.66
CLN3-214ENST00000565140 KCNJ12Q14500 433 aa19.19■□□□□ 0.66
CLN3-214ENST00000565140 MEA1Q16626 185 aa19.19■□□□□ 0.66
CLN3-214ENST00000565140 CT47A1Q5JQC4 288 aaPredicted RBP19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms