RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 TAC4Q86UU9 113 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 NPAS3Q8IXF0 933 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 CMTM8Q8IZV2 173 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 ARL14EPQ8N8R7 260 aaPredicted RBP21.51■■□□□ 1.03
CLN3-212ENST00000564574 ATRIPQ8WXE1 791 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 ING5Q8WYH8 240 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 CENPIQ92674 756 aaPredicted RBP21.51■■□□□ 1.03
CLN3-212ENST00000564574 TBCBQ99426 244 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 TRIM7Q9C029 511 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 RNF38Q9H0F5 515 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 POMKQ9H5K3 350 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 SLITRK6Q9H5Y7 841 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 FAM204AQ9H8W3 233 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 CDH7Q9ULB5 785 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 HBS1LQ9Y450 684 aaKnown RBP21.51■■□□□ 1.03
CLN3-212ENST00000564574 DUSP10Q9Y6W6 482 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 DOCK8Q8NF50 2099 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 GRXCR2A6NFK2 248 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 M0QYT0 321 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 IRAK2O43187 625 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 RNF8O76064 485 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 PROSCO94903 275 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 TBX18O95935 607 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 CKMP06732 381 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 MAN1A1P33908 653 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 RDXP35241 583 aaKnown RBP21.5■■□□□ 1.03
CLN3-212ENST00000564574 COG7P83436 770 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 ZNF252P-AS1Q0IIN9 211 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 TRIP4Q15650 581 aaPredicted RBP21.5■■□□□ 1.03
CLN3-212ENST00000564574 STXBP5Q5T5C0 1151 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 REXO1L1PQ8IX06 675 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 CCAR2Q8N163 923 aaKnown RBP21.5■■□□□ 1.03
CLN3-212ENST00000564574 TPCN2Q8NHX9 752 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.5■■□□□ 1.03
CLN3-212ENST00000564574 FGF13Q92913 245 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 LZTFL1Q9NQ48 299 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 SFMBT1Q9UHJ3 866 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 SALL4Q9UJQ4 1053 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 GUCA1BQ9UMX6 200 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 ZKSCAN5Q9Y2L8 839 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 PAXBP1Q9Y5B6 917 aa21.5■■□□□ 1.03
CLN3-212ENST00000564574 A0A0C4DFX4 3053 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 MACROD2A1Z1Q3 448 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 MDM4O15151 490 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 BUB1O43683 1085 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 ATP11AP98196 1134 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 DEUP1Q05D60 604 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 EIF4EBP2Q13542 120 aaPredicted RBP21.49■■□□□ 1.03
CLN3-212ENST00000564574 MESDQ14696 234 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 C15orf59Q2T9L4 293 aaPredicted RBP21.49■■□□□ 1.03
CLN3-212ENST00000564574 OTUD1Q5VV17 481 aaPredicted RBP21.49■■□□□ 1.03
CLN3-212ENST00000564574 C11orf63Q6NUN7 778 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 SND1Q7KZF4 910 aaKnown RBP eCLIP21.49■■□□□ 1.032e-7■■■□□ 14.9
CLN3-212ENST00000564574 DDX42Q86XP3 938 aaKnown RBP eCLIP21.49■■□□□ 1.03
CLN3-212ENST00000564574 KIAA1524Q8TCG1 905 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 FAM172AQ8WUF8 416 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 BTBD6Q96KE9 485 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 SLC22A12Q96S37 553 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 CYP2S1Q96SQ9 504 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 KLF16Q9BXK1 252 aaPredicted RBP21.49■■□□□ 1.03
CLN3-212ENST00000564574 KIF9Q9HAQ2 790 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 DDIT4Q9NX09 232 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 TRIM10Q9UDY6 481 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 ARHGAP26Q9UNA1 814 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 FAM50BQ9Y247 325 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 TLR6Q9Y2C9 796 aa21.49■■□□□ 1.03
CLN3-212ENST00000564574 SLC12A8A0AV02 714 aa21.48■■□□□ 1.03
CLN3-212ENST00000564574 TCF3P15923 654 aa21.48■■□□□ 1.03
CLN3-212ENST00000564574 SLC1A1P43005 524 aa21.48■■□□□ 1.03
CLN3-212ENST00000564574 TBX4P57082 545 aa21.48■■□□□ 1.03
CLN3-212ENST00000564574 PITX1P78337 314 aaPredicted RBP21.48■■□□□ 1.03
CLN3-212ENST00000564574 RING1Q06587 406 aa21.48■■□□□ 1.03
CLN3-212ENST00000564574 CDO1Q16878 200 aa21.48■■□□□ 1.03
CLN3-212ENST00000564574 MIB1Q86YT6 1006 aa21.48■■□□□ 1.03
CLN3-212ENST00000564574 PLD4Q96BZ4 506 aa21.48■■□□□ 1.03
CLN3-212ENST00000564574 USTQ9Y2C2 406 aa21.48■■□□□ 1.03
CLN3-212ENST00000564574 CPQQ9Y646 472 aa21.48■■□□□ 1.03
CLN3-212ENST00000564574 SLC2A3P11169 496 aa21.47■■□□□ 1.03
CLN3-212ENST00000564574 TFE3P19532 575 aaPredicted RBP21.47■■□□□ 1.03
CLN3-212ENST00000564574 GBP2P32456 591 aaPredicted RBP21.47■■□□□ 1.03
CLN3-212ENST00000564574 PCK1P35558 622 aa21.47■■□□□ 1.03
CLN3-212ENST00000564574 DEKP35659 375 aaKnown RBP21.47■■□□□ 1.03
CLN3-212ENST00000564574 NME3Q13232 169 aa21.47■■□□□ 1.03
CLN3-212ENST00000564574 MTA1Q13330 715 aa21.47■■□□□ 1.03
CLN3-212ENST00000564574 PPP2R5DQ14738 602 aa21.47■■□□□ 1.03
CLN3-212ENST00000564574 BRMS1LQ5PSV4 323 aa21.47■■□□□ 1.03
CLN3-212ENST00000564574 OTOP3Q7RTS5 596 aa21.47■■□□□ 1.03
CLN3-212ENST00000564574 SYCE1Q8N0S2 351 aa21.47■■□□□ 1.03
CLN3-212ENST00000564574 ZSCAN18Q8TBC5 510 aaPredicted RBP21.47■■□□□ 1.03
CLN3-212ENST00000564574 ADAM32Q8TC27 787 aa21.47■■□□□ 1.03
CLN3-212ENST00000564574 SLC39A13Q96H72 371 aa21.47■■□□□ 1.03
CLN3-212ENST00000564574 ADAM33Q9BZ11 813 aa21.47■■□□□ 1.03
CLN3-212ENST00000564574 TRPV4Q9HBA0 871 aa21.47■■□□□ 1.03
CLN3-212ENST00000564574 TDP1Q9NUW8 608 aa21.47■■□□□ 1.03
CLN3-212ENST00000564574 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.47■■□□□ 1.03
CLN3-212ENST00000564574 TRMT1Q9NXH9 659 aaKnown RBP21.47■■□□□ 1.03
CLN3-212ENST00000564574 SYNJ2BP-COX16A0A087WUM0 186 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 MSI1O43347 362 aaKnown RBP21.46■■□□□ 1.03
CLN3-212ENST00000564574 BUB1BO60566 1050 aaPredicted RBP21.46■■□□□ 1.03
CLN3-212ENST00000564574 MOCS3O95396 460 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms