RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	ASL	P04424	464 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	MYL1	P05976	194 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	CALM1	P0DP23	149 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	CALM2	P0DP24	149 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	CALM3	P0DP25	149 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	CAPN2	P17655	700 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	XBP1	P17861	261 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	CERS1	P27544	350 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	TDO2	P48775	406 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	AARS	P49588	968 aa	Known RBP eCLIP	2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	FXR1	P51114	621 aa	Known RBP eCLIP	2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	COPB1	P53618	953 aa	Known RBP	2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	MAPK10	P53779	464 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	HNRNPH2	P55795	449 aa	Known RBP	2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	ITIH3	Q06033	890 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	RBL2	Q08999	1139 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	TROAP	Q12815	778 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	GPS2	Q13227	327 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	KCNB1	Q14721	858 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	KARS	Q15046	597 aa	Known RBP	2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	KRT31	Q15323	416 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	MEA1	Q16626	185 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	MIDN	Q504T8	468 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	PARP10	Q53GL7	1025 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	COBLL1	Q53SF7	1204 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	EARS2	Q5JPH6	523 aa	Known RBP	2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	SPECC1	Q5M775	1068 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	PRAMEF14	Q5SWL7	426 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	ARL6IP4	Q66PJ3	421 aa	Known RBP	2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	SUMO4	Q6EEV6	95 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	KRTAP5-1	Q6L8H4	278 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	ABHD15	Q6UXT9	468 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	CYP26C1	Q6V0L0	522 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	MFSD6	Q6ZSS7	791 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	USP49	Q70CQ1	688 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	TRAPPC11	Q7Z392	1133 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	NEK8	Q86SG6	692 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	ZDHHC17	Q8IUH5	632 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	TMTC1	Q8IUR5	882 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	SLC35F6	Q8N357	371 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	ANKRD31	Q8N7Z5	1873 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	ENAH	Q8N8S7	591 aa	Predicted RBP	2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	FANCB	Q8NB91	859 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	ACRBP	Q8NEB7	543 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	ZSWIM2	Q8NEG5	633 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	NEK11	Q8NG66	645 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	GOLGA5	Q8TBA6	731 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	FAM71B	Q8TC56	605 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	ADAMTS15	Q8TE58	950 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	ATRIP	Q8WXE1	791 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	ESR2	Q92731	530 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	IQCD	Q96DY2	449 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	PAGE5	Q96GU1	130 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	FBXL20	Q96IG2	436 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	PAWR	Q96IZ0	340 aa	Known RBP	2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	RPGRIP1	Q96KN7	1286 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	HAPLN3	Q96S86	360 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	PNKP	Q96T60	521 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	NELL2	Q99435	816 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	NAPG	Q99747	312 aa	Predicted RBP	2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	RIOK1	Q9BRS2	568 aa	Known RBP	2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	NACAP1	Q9BZK3	213 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	TTYH3	Q9C0H2	523 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	VIPAS39	Q9H9C1	493 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	MAGEF1	Q9HAY2	307 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	MED4	Q9NPJ6	270 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	TMEM51	Q9NW97	253 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	OXSM	Q9NWU1	459 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	VPS54	Q9P1Q0	977 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	TRMT112	Q9UI30	125 aa	Known RBP	2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	KCNG1	Q9UIX4	513 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	RWDD2A	Q9UIY3	292 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	MSRA	Q9UJ68	235 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	ASAP1	Q9ULH1	1129 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	L1RE1	Q9UN81	338 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	MYH11	P35749	1972 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	PLIN4	Q96Q06	1357 aa		2.72	□□□□□ -1.97
SPG11-223	ENST00000560858	ABCB11	O95342	1321 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	FLT1	P17948	1338 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	FAM205A	Q6ZU69	1335 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	ATXN2	Q99700	1313 aa	Known RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	IGKV2D-30	A0A075B6S6	120 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CTAGE15	A4D2H0	777 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CXorf49	A8MYA2	514 aa	Predicted RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	KCNJ18	B7U540	433 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	LAD1	O00515	517 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	NPHP1	O15259	732 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	POLR3G	O15318	223 aa	Predicted RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	KLRC4	O43908	158 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	SHOX2	O60902	331 aa	Predicted RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CAMTA2	O94983	1202 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	POMC	P01189	267 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	RPN1	P04843	607 aa	Known RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	IVL	P07476	585 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CTAGE8	P0CG41	777 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	SRGN	P10124	158 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CKB	P12277	381 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	SCG2	P13521	617 aa		2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	CDK11B	P21127	795 aa	Known RBP	2.71	□□□□□ -1.98
SPG11-223	ENST00000560858	GCSH	P23434	173 aa		2.71	□□□□□ -1.98

Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms