RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 HOXB2P14652 356 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 BMP6P22004 513 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 FMO5P49326 533 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 DGKGP49619 791 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 LIMK1P53667 647 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 STX17P56962 302 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 MAP7D1Q3KQU3 841 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 RNF43Q68DV7 783 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 PM20D1Q6GTS8 502 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 SDE2Q6IQ49 451 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 KIAA1211LQ6NV74 962 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 LPCAT2Q7L5N7 544 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 CYP2U1Q7Z449 544 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 TRMT11Q7Z4G4 463 aaKnown RBP10.72□□□□□ -0.69
LDLR-214ENST00000560628 C11orf74Q86VG3 221 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 DENND1CQ8IV53 801 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 CHPFQ8IZ52 775 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 ZNF276Q8N554 614 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 NELFBQ8WX92 580 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 TFAP2BQ92481 460 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 EDEM1Q92611 657 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 KAT5Q92993 513 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 CEP63Q96MT8 703 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 CDK5RAP1Q96SZ6 601 aaKnown RBP10.72□□□□□ -0.69
LDLR-214ENST00000560628 GTPBP4Q9BZE4 634 aaKnown RBP10.72□□□□□ -0.69
LDLR-214ENST00000560628 LRRC4Q9HBW1 653 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 METTL14Q9HCE5 456 aaKnown RBP10.72□□□□□ -0.69
LDLR-214ENST00000560628 HESX1Q9UBX0 185 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 AGO1Q9UL18 857 aaKnown RBP10.72□□□□□ -0.69
LDLR-214ENST00000560628 STRIP2Q9ULQ0 834 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 STARD13Q9Y3M8 1113 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 PCDHB4Q9Y5E5 795 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 RAD54BQ9Y620 910 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 CACNA1AO00555 2505 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 C4orf47A7E2U8 309 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 PIK3R2O00459 728 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 KHNYNO15037 678 aaKnown RBP10.71□□□□□ -0.69
LDLR-214ENST00000560628 ZBTB24O43167 697 aaPredicted RBP10.71□□□□□ -0.69
LDLR-214ENST00000560628 LCP1P13796 627 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 GABRG2P18507 467 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 TBXAS1P24557 533 aaPredicted RBP10.71□□□□□ -0.69
LDLR-214ENST00000560628 PTGER3P43115 390 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 RGS7P49802 495 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 BCAT1P54687 386 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 YWHAEP62258 255 aaKnown RBP10.71□□□□□ -0.69
LDLR-214ENST00000560628 IRX4P78413 519 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 ADIGQ0VDE8 80 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 BST2Q10589 180 aaKnown RBP10.71□□□□□ -0.69
LDLR-214ENST00000560628 BSPRYQ5W0U4 402 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 TTI2Q6NXR4 508 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 TMEM270Q6UE05 265 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 RRAGAQ7L523 313 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 BHLHA9Q7RTU4 235 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 ELOA2Q8IYF1 753 aaPredicted RBP10.71□□□□□ -0.69
LDLR-214ENST00000560628 PPM1KQ8N3J5 372 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 UBR7Q8N806 425 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 IPO4Q8TEX9 1081 aaKnown RBP10.71□□□□□ -0.69
LDLR-214ENST00000560628 SPACA7Q96KW9 195 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 NT5C1BQ96P26 610 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 IPO9Q96P70 1041 aaKnown RBP10.71□□□□□ -0.69
LDLR-214ENST00000560628 EDEM2Q9BV94 578 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 DCLK3Q9C098 648 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 SLC6A17Q9H1V8 727 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 FAM124BQ9H5Z6 455 aaPredicted RBP10.71□□□□□ -0.69
LDLR-214ENST00000560628 CACNA2D2Q9NY47 1150 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 SFMBT1Q9UHJ3 866 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 KIAA1257Q9ULG3 409 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 CLEC4EQ9ULY5 219 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 CTNND2Q9UQB3 1225 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 ZNF510Q9Y2H8 683 aa10.71□□□□□ -0.69
LDLR-214ENST00000560628 KIAA1549LQ6ZVL6 1849 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 YJEFN3A6XGL0 299 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 E7ENQ6 273 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 O00370 1275 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 TSPAN3O60637 253 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 GABBR2O75899 941 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 PENKP01210 267 aaPredicted RBP10.7□□□□□ -0.7
LDLR-214ENST00000560628 ADRB1P08588 477 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 BRD2P25440 801 aaKnown RBP10.7□□□□□ -0.7
LDLR-214ENST00000560628 CHKAP35790 457 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 BYSLQ13895 437 aaKnown RBP10.7□□□□□ -0.7
LDLR-214ENST00000560628 MORC3Q14149 939 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 GEN1Q17RS7 908 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 N4BP2L1Q5TBK1 243 aaPredicted RBP10.7□□□□□ -0.7
LDLR-214ENST00000560628 FYB2Q5VWT5 728 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 LCLAT1Q6UWP7 414 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 FMNL3Q8IVF7 1028 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 ARHGEF19Q8IW93 802 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 SIX6OS1Q8N1H7 587 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 LMO3Q8TAP4 145 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 DDI1Q8WTU0 396 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 RNF139Q8WU17 664 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 DDX1Q92499 740 aaKnown RBP10.7□□□□□ -0.7
LDLR-214ENST00000560628 CNTNAP3BQ96NU0 1288 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 ZSWIM1Q9BR11 485 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 LSM14BQ9BX40 385 aaKnown RBP10.7□□□□□ -0.7
LDLR-214ENST00000560628 SRRTQ9BXP5 876 aaKnown RBP10.7□□□□□ -0.7
LDLR-214ENST00000560628 CNTNAP3Q9BZ76 1288 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 TMEM74BQ9NUR3 256 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 CALCOCO1Q9P1Z2 691 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms