RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PPHLN1Q8NEY8 458 aaKnown RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 MBD3L2Q8NHZ7 208 aaPredicted RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 SUN3Q8TAQ9 357 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 MYCBPAPQ8TBZ2 947 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 SSH3Q8TE77 659 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 SLC22A17Q8WUG5 538 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 OSCP1Q8WVF1 389 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 HMGB4Q8WW32 186 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 ATRIPQ8WXE1 791 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 THAP4Q8WY91 577 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 HTRA1Q92743 480 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 GOLGA1Q92805 767 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 USP13Q92995 863 aaPredicted RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 SKA1Q96BD8 255 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 R3HDM4Q96D70 268 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 RRP36Q96EU6 259 aaKnown RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 WDYHV1Q96HA8 205 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 PRR11Q96HE9 360 aaPredicted RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 MAELQ96JY0 434 aaKnown RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 PPM1MQ96MI6 270 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 TWNKQ96RR1 684 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 WDR24Q96S15 920 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 DCLRE1CQ96SD1 692 aaKnown RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 SEC62Q99442 399 aaKnown RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 HERC2P3Q9BVR0 1158 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 VN1R3Q9BXE9 311 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 TPSD1Q9BZJ3 242 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 AMBRA1Q9C0C7 1298 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 ZHX3Q9H4I2 956 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 HELLSQ9NRZ9 838 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 TMOD4Q9NZQ9 345 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 ZNF69Q9UC07 566 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 FBXO9Q9UK97 447 aaPredicted RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 RAB21Q9UL25 225 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 ASAP1Q9ULH1 1129 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 CA14Q9ULX7 337 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 USP22Q9UPT9 525 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 RCE1Q9Y256 329 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 DRG1Q9Y295 367 aaKnown RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 NOX1Q9Y5S8 564 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 SPATA31A3Q5VYP0 1347 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 COL15A1P39059 1388 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TRGV11A0A075B6L2 103 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 LOC105369274A0A096LPK9 316 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 LOC102723532A0A0G2JNH3 316 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 CENPVL1A0A0U1RR11 272 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 A1L4Q6 167 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 AGAP5A6NIR3 686 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 SLC38A8A6NNN8 435 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 DIRC3C9JPN6 131 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 RNASET2O00584 256 aaKnown RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 CYP27B1O15528 508 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 CA12O43570 354 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 SPRY2O43597 315 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TRIAP1O43715 76 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 SNX2O60749 519 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 SOAT2O75908 522 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 CDKL5O76039 1030 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 HEXIM1O94992 359 aaKnown RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 TK1P04183 234 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 CHRM2P08172 466 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 CSF1P09603 554 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 HNRNPA1P09651 372 aaKnown RBP eCLIP1.87□□□□□ -2.11
USP3-209ENST00000558925 DDX6P26196 483 aaKnown RBP eCLIP1.87□□□□□ -2.11
USP3-209ENST00000558925 ITPKBP27987 946 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 CD38P28907 300 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 PCSK6P29122 969 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 EPHA3P29320 983 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 SERPINA4P29622 427 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 PRKAR1BP31321 381 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 THBS4P35443 961 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 AARSP49588 968 aaKnown RBP eCLIP1.87□□□□□ -2.11
USP3-209ENST00000558925 MTHFSP49914 203 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 NR1H2P55055 460 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TIRAPP58753 221 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 ACTR2P61160 394 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 IRX6P78412 446 aaPredicted RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 SATB1Q01826 763 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 DEUP1Q05D60 604 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TBX2Q13207 712 aaPredicted RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 BFSP2Q13515 415 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TDGQ13569 410 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 ACOX1Q15067 660 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 RPS6KA2Q15349 733 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 SMAD1Q15797 465 aaKnown RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 CYP1B1Q16678 543 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TRIM60Q495X7 471 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 AASDHQ4L235 1098 aaPredicted RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 ZNF484Q5JVG2 852 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TREML2Q5T2D2 321 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 INTS11Q5TA45 600 aaKnown RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 SLC9C2Q5TAH2 1124 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 ATPAF1Q5TC12 328 aaPredicted RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 ANKRD40Q6AI12 368 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 RETSATQ6NUM9 610 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 NFRKBQ6P4R8 1299 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 C16orf89Q6UX73 402 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 KIAA1324Q6UXG2 1013 aaKnown RBP1.87□□□□□ -2.11
USP3-209ENST00000558925 RAB11FIP2Q7L804 512 aa1.87□□□□□ -2.11
USP3-209ENST00000558925 TRABD2AQ86V40 505 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms