RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ARNTLO00327 626 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 ACKR2O00590 384 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 HNRNPDLO14979 420 aaKnown RBP5.47□□□□□ -1.53
LDLR-209ENST00000558528 CLDN3O15551 220 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 TGFB1I1O43294 461 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 FRS3O43559 492 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 EXTL3O43909 919 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 TOM1L1O75674 476 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 ZNF205O95201 554 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 AFPP02771 609 aaKnown RBP5.47□□□□□ -1.53
LDLR-209ENST00000558528 TUBB4AP04350 444 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 ATP1A3P13637 1013 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 NID1P14543 1247 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 VAV1P15498 845 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 TRIM21P19474 475 aaKnown RBP5.47□□□□□ -1.53
LDLR-209ENST00000558528 AXLP30530 894 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 PPM1AP35813 382 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 MATR3P43243 847 aaKnown RBP eCLIP5.47□□□□□ -1.53
LDLR-209ENST00000558528 MAPK9P45984 424 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 PTENP60484 403 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 MRPS5P82675 430 aaKnown RBP5.47□□□□□ -1.53
LDLR-209ENST00000558528 NHLH1Q02575 133 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 CACNB2Q08289 660 aaPredicted RBP5.47□□□□□ -1.53
LDLR-209ENST00000558528 LAMTOR4Q0VGL1 99 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 GAS6Q14393 721 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 CCL14Q16627 93 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 UGT8Q16880 541 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 FAM187BQ17R55 369 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 ANO4Q32M45 955 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 SFRP5Q5T4F7 317 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 INTS11Q5TA45 600 aaKnown RBP5.47□□□□□ -1.53
LDLR-209ENST00000558528 MAP3K21Q5TCX8 1036 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 MBNL2Q5VZF2 373 aaKnown RBP5.47□□□□□ -1.53
LDLR-209ENST00000558528 NFRKBQ6P4R8 1299 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 LRRC55Q6ZSA7 311 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 C22orf34Q6ZV56 151 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 CHSY3Q70JA7 882 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 CCDC186Q7Z3E2 898 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 GPR155Q7Z3F1 870 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 TMC6Q7Z403 805 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 SESTD1Q86VW0 696 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 IRF2BP1Q8IU81 584 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 RHPN2Q8IUC4 686 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 CD302Q8IX05 232 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 GPD1LQ8N335 351 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 TXLNBQ8N3L3 684 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 RNF149Q8NC42 400 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 POMGNT1Q8WZA1 660 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 TRIB2Q92519 343 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 ARL8AQ96BM9 186 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 NAP1L5Q96NT1 182 aaPredicted RBP5.47□□□□□ -1.53
LDLR-209ENST00000558528 PSMG3-AS1Q96PY0 264 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 MED15Q96RN5 788 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 FNBP1Q96RU3 617 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 TSPAN18Q96SJ8 248 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 ADPGKQ9BRR6 497 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 TCHPQ9BT92 498 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 MRPL18Q9H0U6 180 aaKnown RBP5.47□□□□□ -1.53
LDLR-209ENST00000558528 VPS16Q9H269 839 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 HSD3B7Q9H2F3 369 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 RNPEPQ9H4A4 650 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 CERS4Q9HA82 394 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 XPNPEP3Q9NQH7 507 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 DMRT3Q9NQL9 472 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 PAK6Q9NQU5 681 aaPredicted RBP5.47□□□□□ -1.53
LDLR-209ENST00000558528 XPNPEP1Q9NQW7 623 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 TAB2Q9NYJ8 693 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 FLRT1Q9NZU1 646 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 PDP2Q9P2J9 529 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 THEGQ9P2T0 379 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 POLG2Q9UHN1 485 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 GABRQQ9UN88 632 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 STYXL1Q9Y6J8 313 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 CHD6Q8TD26 2715 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 CFAP47Q6ZTR5 3102 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 ATRXP46100 2492 aa5.47□□□□□ -1.53
LDLR-209ENST00000558528 RLFQ13129 1914 aa5.46□□□□□ -1.53
LDLR-209ENST00000558528 MYH15Q9Y2K3 1946 aa5.46□□□□□ -1.53
LDLR-209ENST00000558528 OTOFQ9HC10 1997 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 A0A0U1RQG5 324 aaPredicted RBP5.46□□□□□ -1.54
LDLR-209ENST00000558528 MBLAC1A4D2B0 266 aaPredicted RBP5.46□□□□□ -1.54
LDLR-209ENST00000558528 RHPN2P1A8MT19 583 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 INO80B-WBP1J3KQ70 363 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 J3KRW8 73 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 CLIC2O15247 247 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 CLASP2O75122 1294 aaKnown RBP5.46□□□□□ -1.54
LDLR-209ENST00000558528 ERLIN2O94905 339 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 C22orf31O95567 290 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 CNOT4O95628 575 aaKnown RBP5.46□□□□□ -1.54
LDLR-209ENST00000558528 TFRCP02786 760 aaKnown RBP5.46□□□□□ -1.54
LDLR-209ENST00000558528 PRKCBP05771 671 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 SMIM10L2AP0DMW4 78 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 SMIM10L2BP0DMW5 78 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 CYP2C9P11712 490 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 HTR1BP28222 390 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 GJA4P35212 333 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 VAMP7P51809 220 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 CASP5P51878 434 aa5.46□□□□□ -1.54
LDLR-209ENST00000558528 SRSF2Q01130 221 aaKnown RBP5.46□□□□□ -1.54
LDLR-209ENST00000558528 PRPF4BQ13523 1007 aaKnown RBP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms