RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 SLC18A2Q05940 514 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 CNGA3Q16281 694 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 LRRC36Q1X8D7 754 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 ZNF423Q2M1K9 1284 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 GRAMD1BQ3KR37 738 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 RINT1Q6NUQ1 792 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 SWSAP1Q6NVH7 229 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 TAPT1Q6NXT6 567 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 METTL7BQ6UX53 244 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 ARMCX6Q7L4S7 300 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 GSTA5Q7RTV2 222 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 PCGF5Q86SE9 256 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 SLC9A9Q8IVB4 645 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 C4orf19Q8IY42 314 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 TTC13Q8NBP0 860 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 ACTRT2Q8TDY3 377 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 GIPC3Q8TF64 312 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 PCDHB18PQ96TA0 734 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 TINF2Q9BSI4 451 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 KLC2Q9H0B6 622 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 TSPYL2Q9H2G4 693 aaPredicted RBP11.27□□□□□ -0.61
USP3-206ENST00000558157 RRN3Q9NYV6 651 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 SCHIP1Q9P0W5 487 aaPredicted RBP11.27□□□□□ -0.61
USP3-206ENST00000558157 KIAA1522Q9P206 1035 aaPredicted RBP11.27□□□□□ -0.61
USP3-206ENST00000558157 SLC17A7Q9P2U7 560 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 CROTQ9UKG9 612 aa11.27□□□□□ -0.61
USP3-206ENST00000558157 FAM237BA0A1B0GVD1 139 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 ARHGEF35A5YM69 484 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 ZNF701M0R085 212 aaPredicted RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 ITM2AO43736 263 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 TXNP10599 105 aaKnown RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 ZNF23P17027 643 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 YWHABP31946 246 aaKnown RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 ALDH1A3P47895 512 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 ZNF200P98182 395 aaPredicted RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 BFSP1Q12934 665 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 TTLL4Q14679 1199 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 CELF3Q5SZQ8 465 aaKnown RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 RARS2Q5T160 578 aaKnown RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 PLA2G4FQ68DD2 849 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 TRMT1LQ7Z2T5 733 aaKnown RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 FAM71AQ8IYT1 594 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 CCDC33Q8N5R6 958 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 USP6NLQ92738 828 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 ARHGAP39Q9C0H5 1083 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 THSD7BQ9C0I4 1608 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 UBE2TQ9NPD8 197 aaPredicted RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 AVENQ9NQS1 362 aaPredicted RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 UTP6Q9NYH9 597 aaKnown RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 FLRT1Q9NZU1 646 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 ITGA11Q9UKX5 1188 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 PSMD13Q9UNM6 376 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 TDRKHQ9Y2W6 561 aaKnown RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 MYH9P35579 1960 aaKnown RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 ARHGAP42A6NI28 874 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 RSPH10B2B2RC85 870 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 TPD52L2O43399 206 aaKnown RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 KLHL2O95198 593 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 ATG7O95352 703 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 MT-ND3P03897 115 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 EIF2S1P05198 315 aaKnown RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 RSPH10BP0C881 870 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 S100A1P23297 94 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 GJC2Q5T442 439 aaPredicted RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 THOC7Q6I9Y2 204 aaKnown RBP11.26□□□□□ -0.61
USP3-206ENST00000558157 C1orf186Q6ZWK4 172 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 KBTBD6Q86V97 674 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 SLC25A41Q8N5S1 370 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 APBB2Q92870 758 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 ATP6V0A1Q93050 837 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 DCUN1D1Q96GG9 259 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 BTBD6Q96KE9 485 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 PAFAH2Q99487 392 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 SH2D3AQ9BRG2 576 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 IGSF9Q9P2J2 1179 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 SEL1LQ9UBV2 794 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 INPP5FQ9Y2H2 1132 aa11.26□□□□□ -0.61
USP3-206ENST00000558157 PMM2O15305 246 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 FAM189A1O60320 539 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 BAIAP3O94812 1187 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 SRGAP2CP0DJJ0 459 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 SRGAP2BP0DMP2 458 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 RALAP11233 206 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 RAG1P15918 1043 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 CYP2B6P20813 491 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 BGNP21810 368 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 SERPINB6P35237 376 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 ADCYAP1R1P41586 468 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 VEGFBP49765 207 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 RARRES1P49788 294 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 NAA20P61599 178 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 PRKCEQ02156 737 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 WASHC5Q12768 1159 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 CCL14Q16627 93 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 KATNAL2Q8IYT4 538 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 ADCY4Q8NFM4 1077 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 SOCS4Q8WXH5 440 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 TRIM11Q96F44 468 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 GCNAQ96QF7 691 aa11.25□□□□□ -0.61
USP3-206ENST00000558157 PALMDQ9NP74 551 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms