RNA–Protein interactions for RNA: ENST00000556778.5

PRKCH-222, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-222	ENST00000556778	MESP2	Q0VG99	397 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	USP4	Q13107	963 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	EML3	Q32P44	896 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	OR6B2	Q6IFH4	312 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	OLFML1	Q6UWY5	402 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	LIAT1	Q6ZQX7	453 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	MMS22L	Q6ZRQ5	1243 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	RSRC2	Q7L4I2	434 aa	Known RBP	9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	ZNF571	Q7Z3V5	609 aa	Predicted RBP	9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	TMEM35B	Q8NCS4	154 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	DEPDC1B	Q8WUY9	529 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	OSCP1	Q8WVF1	389 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	IRF7	Q92985	503 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	PBXIP1	Q96AQ6	731 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	E2F7	Q96AV8	911 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	LRFN3	Q9BTN0	628 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	HAUS4	Q9H6D7	363 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	ARHGEF3	Q9NR81	526 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	OBP2A	Q9NY56	170 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	DNMT3L	Q9UJW3	386 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	PIAS3	Q9Y6X2	628 aa		9.22	□□□□□ -0.93
PRKCH-222	ENST00000556778	GOLGA6L7	A0A1B0GV03	622 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	GOLGA8S	H3BPF8	625 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	TRDMT1	O14717	391 aa	Known RBP	9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	TRIM24	O15164	1050 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	STC2	O76061	302 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	DXO	O77932	396 aa	Known RBP	9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	LTF	P02788	710 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	NCAM1	P13591	858 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	GLUL	P15104	373 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	FER	P16591	822 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	HOXC13	P31276	330 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	SLC6A11	P48066	632 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	YWHAZ	P63104	245 aa	Known RBP	9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	PTP4A2	Q12974	167 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	FZD5	Q13467	585 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	RUNX3	Q13761	415 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	MLF2	Q15773	248 aa	Predicted RBP	9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	ASIC2	Q16515	512 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	MEA1	Q16626	185 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	CLEC16A	Q2KHT3	1053 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	GAB4	Q2WGN9	574 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	ARHGAP29	Q52LW3	1261 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	RAB6C	Q53S08	254 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	SFMBT2	Q5VUG0	894 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	HGSNAT	Q68CP4	663 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	CWF19L1	Q69YN2	538 aa	Known RBP	9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	TRNP1	Q6NT89	227 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	CC2D1A	Q6P1N0	951 aa	Predicted RBP	9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	RHBDF2	Q6PJF5	856 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	TPRG1	Q6ZUI0	275 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	ERICH1	Q86X53	443 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	XYLT1	Q86Y38	959 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	TMEM25	Q86YD3	366 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	DENND1C	Q8IV53	801 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	FMNL3	Q8IVF7	1028 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	VSTM4	Q8IW00	320 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	SFTPA1	Q8IWL2	248 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	DEFB106A	Q8N104	65 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	SCML4	Q8N228	414 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	TMEM105	Q8N8V8	129 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	RNF139	Q8WU17	664 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	IRGQ	Q8WZA9	623 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	FAM149B1	Q96BN6	582 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	RAB6C	Q9H0N0	254 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	KDM4C	Q9H3R0	1056 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	SYNC	Q9H7C4	482 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	ECT2	Q9H8V3	914 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	TBC1D17	Q9HA65	648 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	ABCC13	Q9NSE7	274 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	SEPT11	Q9NVA2	429 aa	Known RBP	9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	THG1L	Q9NWX6	298 aa	Known RBP	9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	AIPL1	Q9NZN9	384 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	MARCH2	Q9P0N8	246 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	RAPGEFL1	Q9UHV5	662 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	ZMYM5	Q9UJ78	669 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	CAPN11	Q9UMQ6	739 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	SH3BP1	Q9Y3L3	701 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	TRIO	O75962	3097 aa		9.21	□□□□□ -0.94
PRKCH-222	ENST00000556778	DENND4A	Q7Z401	1863 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	SYNJ2BP-COX16	A0A087WUM0	186 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	FAM170B	A6NMN3	283 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	SPECC1L-ADORA2A	F8WAN1	911 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	DDX3X	O00571	662 aa	Known RBP eCLIP	9.2	□□□□□ -0.94	2e-15	■■■■■ 68.5
PRKCH-222	ENST00000556778	GPR37L1	O60883	481 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	FBXO21	O94952	628 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	DCN	P07585	359 aa	Known RBP	9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	PFKL	P17858	780 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	MMP8	P22894	467 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	GJA4	P35212	333 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	SLC19A1	P41440	591 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	ACADSB	P45954	432 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	GABRB2	P47870	512 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	GALK1	P51570	392 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	KPNA1	P52294	538 aa	Predicted RBP	9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	ATXN1	P54253	815 aa	Known RBP	9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	ADK	P55263	362 aa	Known RBP	9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	STARD6	P59095	220 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	SLC6A3	Q01959	620 aa		9.2	□□□□□ -0.94
PRKCH-222	ENST00000556778	DHCR24	Q15392	516 aa		9.2	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms