RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 TCEAL9Q9UHQ7 104 aa4.39□□□□□ -1.71
ATXN3-240ENST00000556339 EIF2B4Q9UI10 523 aaKnown RBP4.39□□□□□ -1.71
ATXN3-240ENST00000556339 PCDHA6Q9UN73 950 aa4.39□□□□□ -1.71
ATXN3-240ENST00000556339 FAM50BQ9Y247 325 aa4.39□□□□□ -1.71
ATXN3-240ENST00000556339 TNFRSF18Q9Y5U5 241 aa4.39□□□□□ -1.71
ATXN3-240ENST00000556339 SNX14Q9Y5W7 946 aa4.39□□□□□ -1.71
ATXN3-240ENST00000556339 CYP46A1Q9Y6A2 500 aa4.39□□□□□ -1.71
ATXN3-240ENST00000556339 MYH9P35579 1960 aaKnown RBP4.39□□□□□ -1.71
ATXN3-240ENST00000556339 VCANP13611 3396 aa4.39□□□□□ -1.71
ATXN3-240ENST00000556339 MYO10Q9HD67 2058 aa4.39□□□□□ -1.71
ATXN3-240ENST00000556339 TRANK1O15050 2925 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 CCDC163A0A0D9SF12 145 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 RRN3P2A6NIE6 340 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 CYTH3O43739 400 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 CAND2O75155 1236 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 PLEKHA8P1O95397 391 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 LMNAP02545 664 aaKnown RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 PTMAP06454 111 aaKnown RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 HMGB1P09429 215 aaKnown RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 CCDC192P0DO97 292 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 GHRP10912 638 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 HNRNPLP14866 589 aaKnown RBP eCLIP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 SYT1P21579 422 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 KCNA5P22460 613 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 SMARCA1P28370 1054 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 ICAM3P32942 547 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 CTNNB1P35222 781 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 TCF7P36402 384 aaPredicted RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 NAPAP54920 295 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 ADAM8P78325 824 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 KRT85P78386 507 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 MRPS9P82933 396 aaKnown RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 COL10A1Q03692 680 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 RBL2Q08999 1139 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 TROAPQ12815 778 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 PPFIA1Q13136 1202 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 MTMR1Q13613 665 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 PKP1Q13835 747 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 SPIDRQ14159 915 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 BTG3Q14201 252 aaPredicted RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 GPNMBQ14956 572 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 NECTIN1Q15223 517 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 UBE2SQ16763 222 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 CCDC142Q17RM4 750 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 TCTN1Q2MV58 587 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 TRIM71Q2Q1W2 868 aaKnown RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 EPC2Q52LR7 807 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 PLEKHG4Q58EX7 1191 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 TMEM31Q5JXX7 168 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 CREB3L3Q68CJ9 461 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 ABHD17CQ6PCB6 329 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 RUFY3Q7L099 469 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 TRMT1LQ7Z2T5 733 aaKnown RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 MB21D2Q8IYB1 491 aaPredicted RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 SRBD1Q8N5C6 995 aaKnown RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 KIAA1958Q8N8K9 716 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 CHST14Q8NCH0 376 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 DNAJB3Q8WWF6 145 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 APBB2Q92870 758 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 TOP1MTQ969P6 601 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 PPP2R3CQ969Q6 453 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 SRPK1Q96SB4 655 aaKnown RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 MAP3K14Q99558 947 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 SENP7Q9BQF6 1050 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 CPPED1Q9BRF8 314 aaPredicted RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 LLPHQ9BRT6 129 aaKnown RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 C17orf80Q9BSJ5 609 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 SPZ1Q9BXG8 430 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 IL25Q9H293 177 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 EPHX3Q9H6B9 360 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 UBE2ZQ9H832 354 aaPredicted RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 LY9Q9HBG7 655 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 PDRG1Q9NUG6 133 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 DDX19AQ9NUU7 478 aaKnown RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 SPTLC3Q9NUV7 552 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 ERAP1Q9NZ08 941 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 TRPS1Q9UHF7 1281 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 GINS2Q9Y248 185 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 KIF3AQ9Y496 699 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 TNPO3Q9Y5L0 923 aaKnown RBP4.38□□□□□ -1.71
ATXN3-240ENST00000556339 NRCAMQ92823 1304 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 LOXHD1Q8IVV2 1947 aa4.38□□□□□ -1.71
ATXN3-240ENST00000556339 PTPRZ1P23471 2315 aaPredicted RBP4.37□□□□□ -1.71
ATXN3-240ENST00000556339 GSTTP1A0A1W2PQM5 241 aa4.37□□□□□ -1.71
ATXN3-240ENST00000556339 SMCO2A6NFE2 343 aa4.37□□□□□ -1.71
ATXN3-240ENST00000556339 DDX39AO00148 427 aaKnown RBP4.37□□□□□ -1.71
ATXN3-240ENST00000556339 SH2B2O14492 632 aaPredicted RBP4.37□□□□□ -1.71
ATXN3-240ENST00000556339 ENPP3O14638 875 aa4.37□□□□□ -1.71
ATXN3-240ENST00000556339 MEIS2O14770 477 aa4.37□□□□□ -1.71
ATXN3-240ENST00000556339 NRP1O14786 923 aa4.37□□□□□ -1.71
ATXN3-240ENST00000556339 ZBTB43O43298 467 aa4.37□□□□□ -1.71
ATXN3-240ENST00000556339 NCK2O43639 380 aa4.37□□□□□ -1.71
ATXN3-240ENST00000556339 B3GALT2O43825 422 aa4.37□□□□□ -1.71
ATXN3-240ENST00000556339 NEMFO60524 1076 aa4.37□□□□□ -1.71
ATXN3-240ENST00000556339 ATP9AO75110 1047 aa4.37□□□□□ -1.71
ATXN3-240ENST00000556339 FOSP01100 380 aaPredicted RBP4.37□□□□□ -1.71
ATXN3-240ENST00000556339 CHRNA1P02708 482 aa4.37□□□□□ -1.71
ATXN3-240ENST00000556339 TUBB4AP04350 444 aa4.37□□□□□ -1.71
ATXN3-240ENST00000556339 CYP17A1P05093 508 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms