RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 PPM1KQ8N3J5 372 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 SHKBP1Q8TBC3 707 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 CSGALNACT1Q8TDX6 532 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 EPS8L1Q8TE68 723 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 PARD3BQ8TEW8 1205 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 MAIP1Q8WWC4 291 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 KRT12Q99456 494 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 EDEM2Q9BV94 578 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 CDT1Q9H211 546 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 PCIF1Q9H4Z3 704 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 CYP4F11Q9HBI6 524 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 GOLGA6AQ9NYA3 693 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 GTSE1Q9NYZ3 720 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 CTTNBP2NLQ9P2B4 639 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 BPTFQ12830 3046 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 OBSL1O75147 1896 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 KRIT1O00522 736 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 CHADO15335 359 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 ATF2P15336 505 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 DNA2P51530 1060 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 EPHA5P54756 1037 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 MLLT6P55198 1093 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-216ENST00000554975 GUCY2DQ02846 1103 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 SOX4Q06945 474 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-216ENST00000554975 PSMD6Q15008 389 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 SURF1Q15526 300 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 PLK5Q496M5 336 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 DGKKQ5KSL6 1271 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 KIAA1211LQ6NV74 962 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 MPZL3Q6UWV2 235 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 LRIG3Q6UXM1 1119 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 ANKS3Q6ZW76 656 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 CROCCP2Q86T23 111 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 TCEAL8Q8IYN2 117 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 CEP120Q8N960 986 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 SLC35G2Q8TBE7 412 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 ZBTB45Q96K62 511 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-216ENST00000554975 PPP1R10Q96QC0 940 aaKnown RBP11.69□□□□□ -0.54
SHMT2-216ENST00000554975 FNBP1Q96RU3 617 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 SH3GL2Q99962 352 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 C8orf33Q9H7E9 229 aaPredicted RBP11.69□□□□□ -0.54
SHMT2-216ENST00000554975 FAM204AQ9H8W3 233 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 EPB41L5Q9HCM4 733 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 VPS45Q9NRW7 570 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 UTP11Q9Y3A2 253 aaKnown RBP11.69□□□□□ -0.54
SHMT2-216ENST00000554975 PCDHGA5Q9Y5G8 931 aa11.69□□□□□ -0.54
SHMT2-216ENST00000554975 ACACAQ13085 2346 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 TMEM8BA6NDV4 472 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 DCLK1O15075 740 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 BUB1BO60566 1050 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-216ENST00000554975 MYBL2P10244 700 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 MCF2P10911 925 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 ABCB4P21439 1286 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 TBXAS1P24557 533 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-216ENST00000554975 ELF1P32519 619 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 MAN1A1P33908 653 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 ACTN2P35609 894 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 HSPA9P38646 679 aaKnown RBP11.68□□□□□ -0.54
SHMT2-216ENST00000554975 CDR1P51861 262 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 CDR2Q01850 454 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 TNK2Q07912 1038 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 FCHO2Q0JRZ9 810 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 TWF1Q12792 350 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 HLTFQ14527 1009 aaKnown RBP eCLIP11.68□□□□□ -0.54
SHMT2-216ENST00000554975 UPP1Q16831 310 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 ARHGEF19Q8IW93 802 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 CD302Q8IX05 232 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 GSPT2Q8IYD1 628 aaKnown RBP11.68□□□□□ -0.54
SHMT2-216ENST00000554975 ARFGAP2Q8N6H7 521 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 RDH13Q8NBN7 331 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 OLIG1Q8TAK6 271 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 MSANTD3Q96H12 275 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 ZC3H10Q96K80 434 aaKnown RBP11.68□□□□□ -0.54
SHMT2-216ENST00000554975 ACAP3Q96P50 834 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 LRRC3Q9BY71 257 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 IMPG2Q9BZV3 1241 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 DUSP15Q9H1R2 295 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-216ENST00000554975 TOPORSQ9NS56 1045 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-216ENST00000554975 RAB20Q9NX57 234 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 NOCTQ9UK39 431 aaKnown RBP11.68□□□□□ -0.54
SHMT2-216ENST00000554975 STYXL1Q9Y6J8 313 aa11.68□□□□□ -0.54
SHMT2-216ENST00000554975 ASH1LQ9NR48 2969 aaKnown RBP11.68□□□□□ -0.54
SHMT2-216ENST00000554975 CEP192Q8TEP8 1941 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 LNP1A1A4G5 178 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 FOXN3O00409 490 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-216ENST00000554975 CLDN3O15551 220 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 RAD51CO43502 376 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 TOM1L1O75674 476 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 VNN2O95498 520 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 CTNNA2P26232 953 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 CHRNA3P32297 505 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 GRM5P41594 1212 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 PIK3CAP42336 1068 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 SEZ6Q53EL9 994 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 C1orf220Q5T0J3 134 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 CYP4A22Q5TCH4 519 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 ZPBP2Q6X784 338 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 RALGPS2Q86X27 583 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-216ENST00000554975 TMC8Q8IU68 726 aa11.67□□□□□ -0.54
SHMT2-216ENST00000554975 CBWD2Q8IUF1 395 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms