RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TMEM120AQ9BXJ8 343 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 RNF208Q9H0X6 261 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 NUP98P52948 1817 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 GPR25O00155 361 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 NDUFS3O75489 264 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 MAPRE1Q15691 268 aaKnown RBP16.78■□□□□ 0.28
CUX1-213ENST00000549414 GPR142Q7Z601 462 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 UNC45BQ8IWX7 931 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 TRIM4Q9C037 500 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 ALS2Q96Q42 1657 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 O00370 1275 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 CLDN5O00501 218 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 AVILO75366 819 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 KCNA4P22459 653 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 ALLCQ8N6M5 410 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 SRPK1Q96SB4 655 aaKnown RBP16.78■□□□□ 0.28
CUX1-213ENST00000549414 FICDQ9BVA6 458 aa16.78■□□□□ 0.28
CUX1-213ENST00000549414 EEF1B2P24534 225 aaKnown RBP16.77■□□□□ 0.28
CUX1-213ENST00000549414 ARL2P36404 184 aa16.77■□□□□ 0.28
CUX1-213ENST00000549414 SERPINB4P48594 390 aa16.77■□□□□ 0.28
CUX1-213ENST00000549414 TMEM259Q4ZIN3 620 aa16.77■□□□□ 0.28
CUX1-213ENST00000549414 LRRC8EQ6NSJ5 796 aa16.77■□□□□ 0.28
CUX1-213ENST00000549414 MYH10P35580 1976 aa16.77■□□□□ 0.28
CUX1-213ENST00000549414 GLRA3O75311 464 aa16.77■□□□□ 0.28
CUX1-213ENST00000549414 CBX6O95503 412 aa16.77■□□□□ 0.28
CUX1-213ENST00000549414 MT-CO1P00395 513 aa16.77■□□□□ 0.28
CUX1-213ENST00000549414 CTXN3Q4LDR2 81 aa16.77■□□□□ 0.28
CUX1-213ENST00000549414 RPAINQ86UA6 219 aa16.77■□□□□ 0.28
CUX1-213ENST00000549414 SPDYE1Q8NFV5 336 aaPredicted RBP16.77■□□□□ 0.28
CUX1-213ENST00000549414 RBM22Q9NW64 420 aaKnown RBP eCLIP16.77■□□□□ 0.28
CUX1-213ENST00000549414 ARMCX1Q9P291 453 aa16.77■□□□□ 0.28
CUX1-213ENST00000549414 DOT1LQ8TEK3 1739 aa16.77■□□□□ 0.28
CUX1-213ENST00000549414 PSMD3O43242 534 aa16.77■□□□□ 0.27
CUX1-213ENST00000549414 ONECUT3O60422 494 aaPredicted RBP16.77■□□□□ 0.27
CUX1-213ENST00000549414 ANXA9O76027 345 aa16.77■□□□□ 0.27
CUX1-213ENST00000549414 TRUB2O95900 331 aaKnown RBP16.77■□□□□ 0.27
CUX1-213ENST00000549414 DNAJB2P25686 324 aa16.77■□□□□ 0.27
CUX1-213ENST00000549414 LRRC38Q5VT99 294 aa16.77■□□□□ 0.27
CUX1-213ENST00000549414 C16orf46Q6P387 395 aa16.77■□□□□ 0.27
CUX1-213ENST00000549414 ANGPTL8Q6UXH0 198 aa16.77■□□□□ 0.27
CUX1-213ENST00000549414 BBS12Q6ZW61 710 aa16.77■□□□□ 0.27
CUX1-213ENST00000549414 SH3TC2Q8TF17 1288 aa16.77■□□□□ 0.27
CUX1-213ENST00000549414 TFAP2BQ92481 460 aa16.77■□□□□ 0.27
CUX1-213ENST00000549414 NT5MQ9NPB1 228 aa16.77■□□□□ 0.27
CUX1-213ENST00000549414 SLCO1B3Q9NPD5 702 aa16.77■□□□□ 0.27
CUX1-213ENST00000549414 VANGL2Q9ULK5 521 aa16.77■□□□□ 0.27
CUX1-213ENST00000549414 MANSC4A6NHS7 340 aaPredicted RBP16.76■□□□□ 0.27
CUX1-213ENST00000549414 ERBB2P04626 1255 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 SP2Q02086 613 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 MPP3Q13368 585 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 C1orf127Q8N9H9 656 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 MRPL45Q9BRJ2 306 aaKnown RBP16.76■□□□□ 0.27
CUX1-213ENST00000549414 MAFBQ9Y5Q3 323 aaPredicted RBP16.76■□□□□ 0.27
CUX1-213ENST00000549414 NUDT17P0C025 328 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 RBBP7Q16576 425 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 PACS2Q86VP3 889 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 MSL3Q8N5Y2 521 aaKnown RBP16.76■□□□□ 0.27
CUX1-213ENST00000549414 NCLNQ969V3 563 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 RNF157Q96PX1 679 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 TSPYL2Q9H2G4 693 aaPredicted RBP16.76■□□□□ 0.27
CUX1-213ENST00000549414 RNF103-CHMP3A0A140T963 221 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 AP3B1O00203 1094 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 YBX3P16989 372 aaKnown RBP eCLIP16.76■□□□□ 0.275e-6■■■□□ 19.1
CUX1-213ENST00000549414 ZNF280AP59817 542 aaPredicted RBP16.76■□□□□ 0.27
CUX1-213ENST00000549414 IMPG1Q17R60 797 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 PLEKHO2Q8TD55 490 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 ZNF75CPQ92670 426 aaPredicted RBP16.76■□□□□ 0.27
CUX1-213ENST00000549414 DPF3Q92784 378 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 KDM4CQ9H3R0 1056 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 IL1RL2Q9HB29 575 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 TUBGCP4Q9UGJ1 667 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 PCDHB7Q9Y5E2 793 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 SLC12A8A0AV02 714 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 FBXO21O94952 628 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 AKR1A1P14550 325 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 PTPN1P18031 435 aaKnown RBP16.76■□□□□ 0.27
CUX1-213ENST00000549414 CCND1P24385 295 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 ITGA9Q13797 1035 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 N4BP2L1Q5TBK1 243 aaPredicted RBP16.76■□□□□ 0.27
CUX1-213ENST00000549414 TAF2Q6P1X5 1199 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 ARRDC4Q8NCT1 418 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 LENG1Q96BZ8 264 aaPredicted RBP16.76■□□□□ 0.27
CUX1-213ENST00000549414 NAT9Q9BTE0 207 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 CDY2AQ9Y6F7 541 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 CDY1Q9Y6F8 540 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 SNCAIPQ9Y6H5 919 aa16.76■□□□□ 0.27
CUX1-213ENST00000549414 SPDYE5A6NIY4 337 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 SPTLC1O15269 473 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 PLEKHA7Q6IQ23 1121 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.75■□□□□ 0.27
CUX1-213ENST00000549414 GON4LQ3T8J9 2241 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 ZMYM2Q9UBW7 1377 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 MYH6P13533 1939 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 NRCAMQ92823 1304 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 E9PBE3 544 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 KLHL41O60662 606 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 CSE1LP55060 971 aaKnown RBP16.75■□□□□ 0.27
CUX1-213ENST00000549414 MGAT5Q09328 741 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 RASA2Q15283 850 aa16.75■□□□□ 0.27
CUX1-213ENST00000549414 DNAL1Q4LDG9 190 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms