RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 ZC3H14Q6PJT7 736 aaKnown RBP12.41□□□□□ -0.42
YBX3-217ENST00000546164 SLC47A2Q86VL8 602 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 C12orf40Q86WS4 652 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 FMNL3Q8IVF7 1028 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 DHX40Q8IX18 779 aaKnown RBP12.41□□□□□ -0.42
YBX3-217ENST00000546164 SCUBE3Q8IX30 993 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 FAM217AQ8IXS0 508 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 PHTF2Q8N3S3 785 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 AOPEPQ8N6M6 819 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 EDEM1Q92611 657 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 GOLGA1Q92805 767 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 ERGIC2Q96RQ1 377 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 PNKPQ96T60 521 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 TRIM62Q9BVG3 475 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 ST7Q9NRC1 585 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 ZSCAN32Q9NX65 697 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 WDR35Q9P2L0 1181 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 METRNQ9UJH8 293 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 STOML2Q9UJZ1 356 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 PCDHGA2Q9Y5H1 932 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 GVINP1Q7Z2Y8 2422 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 FAM186AA6NE01 2351 aa12.41□□□□□ -0.42
YBX3-217ENST00000546164 PTPRZ1P23471 2315 aaPredicted RBP12.4□□□□□ -0.42
YBX3-217ENST00000546164 EP300Q09472 2414 aaPredicted RBP12.4□□□□□ -0.42
YBX3-217ENST00000546164 SMTNL1A8MU46 457 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 E5RJQ4 531 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 K7EQS6 105 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 K7ESF4 209 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 PIK3R2O00459 728 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 CACNG3O60359 315 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 TULP3O75386 442 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 KAT7O95251 611 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 LATS1O95835 1130 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 IGLV3-27P01718 113 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 FYNP06241 537 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 C7P10643 843 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 CHRM1P11229 460 aaPredicted RBP12.4□□□□□ -0.42
YBX3-217ENST00000546164 CYP11B1P15538 503 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 CDK11BP21127 795 aaKnown RBP12.4□□□□□ -0.42
YBX3-217ENST00000546164 CORO1AP31146 461 aaKnown RBP12.4□□□□□ -0.42
YBX3-217ENST00000546164 CDH5P33151 784 aaPredicted RBP12.4□□□□□ -0.42
YBX3-217ENST00000546164 KRT9P35527 623 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 CHKAP35790 457 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 GRIA2P42262 883 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 SLC6A11P48066 632 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 ZNF165P49910 485 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 NRLP54845 237 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 RING1Q06587 406 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 NNTQ13423 1086 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 PREPLQ4J6C6 727 aaPredicted RBP12.4□□□□□ -0.42
YBX3-217ENST00000546164 PKN3Q6P5Z2 889 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 CPXM2Q8N436 756 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 CLEC4CQ8WTT0 213 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 DDX1Q92499 740 aaKnown RBP12.4□□□□□ -0.42
YBX3-217ENST00000546164 NOX5Q96PH1 765 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 MIS12Q9H081 205 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 ASNSD1Q9NWL6 643 aa12.4□□□□□ -0.42
YBX3-217ENST00000546164 AGO1Q9UL18 857 aaKnown RBP12.4□□□□□ -0.42
YBX3-217ENST00000546164 OTOGLQ3ZCN5 2332 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 FANCMQ8IYD8 2048 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 GFRA2O00451 464 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 EPHB6O15197 1021 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 LILRB5O75023 590 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 PENKP01210 267 aaPredicted RBP12.39□□□□□ -0.43
YBX3-217ENST00000546164 APODP05090 189 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 GLI1P08151 1106 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 ATP1A3P13637 1013 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 TYRP14679 529 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 HARS2P49590 506 aaKnown RBP12.39□□□□□ -0.43
YBX3-217ENST00000546164 KLK7P49862 253 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 MRE11P49959 708 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 JAM2P57087 298 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 SNX16P57768 344 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 ZNF445P59923 1031 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 UBXN1Q04323 297 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 MESP2Q0VG99 397 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 IQCB1Q15051 598 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 SYCP1Q15431 976 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 ANO4Q32M45 955 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 LCE2DQ5TA82 110 aaPredicted RBP12.39□□□□□ -0.43
YBX3-217ENST00000546164 TSSK4Q6SA08 328 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 SYT13Q7L8C5 426 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 EPS8L1Q8TE68 723 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 DQX1Q8TE96 717 aaKnown RBP12.39□□□□□ -0.43
YBX3-217ENST00000546164 USP33Q8TEY7 942 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 SLC39A7Q92504 469 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 ACDQ96AP0 544 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 PPP1R13BQ96KQ4 1090 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 SERPINB11Q96P15 392 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 XPO6Q96QU8 1125 aaKnown RBP12.39□□□□□ -0.43
YBX3-217ENST00000546164 CPXM1Q96SM3 734 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 BBS2Q9BXC9 721 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 ARHGEF4Q9NR80 690 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 FAM207AQ9NSI2 230 aaPredicted RBP12.39□□□□□ -0.43
YBX3-217ENST00000546164 C2orf42Q9NWW7 574 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 DEC1Q9P2X7 70 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 SFMBT1Q9UHJ3 866 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 FBXO10Q9UK96 956 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 CEP83Q9Y592 693 aa12.39□□□□□ -0.43
YBX3-217ENST00000546164 R4GN57 208 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms