RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 PITPNM3Q9BZ71 974 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 MTMR10Q9NXD2 777 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 GIT1Q9Y2X7 761 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 IKBKGQ9Y6K9 419 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 USH1CQ9Y6N9 552 aa10.23□□□□□ -0.77
SS18-205ENST00000542420 ARHGEF37A1IGU5 675 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 KLF11O14901 512 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 DCTN3O75935 186 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 MYL3P08590 195 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 DHRS4L1P0CG22 281 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 CA4P22748 312 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 ALDH3A1P30838 453 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 ELK3P41970 407 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 YWHAZP63104 245 aaKnown RBP10.22□□□□□ -0.77
SS18-205ENST00000542420 IRX1P78414 480 aaPredicted RBP10.22□□□□□ -0.77
SS18-205ENST00000542420 ATP11AP98196 1134 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 BNIP1Q12981 228 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 FRG1Q14331 258 aaKnown RBP10.22□□□□□ -0.77
SS18-205ENST00000542420 LRRC14Q15048 493 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 PAFAH1B3Q15102 231 aaKnown RBP10.22□□□□□ -0.77
SS18-205ENST00000542420 FSCN1Q16658 493 aaKnown RBP10.22□□□□□ -0.77
SS18-205ENST00000542420 CDO1Q16878 200 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 SH3PXD2AQ5TCZ1 1133 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 TTC39BQ5VTQ0 682 aaPredicted RBP10.22□□□□□ -0.77
SS18-205ENST00000542420 STEAP4Q687X5 459 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 SCYL2Q6P3W7 929 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 MRPL10Q7Z7H8 261 aaKnown RBP10.22□□□□□ -0.77
SS18-205ENST00000542420 RASAL3Q86YV0 1011 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 SCUBE3Q8IX30 993 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 C7orf31Q8N865 590 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 IRGQQ8WZA9 623 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 CSPG4P5Q96PW8 444 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 NPY6RQ99463 290 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 CD248Q9HCU0 757 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 RAB6BQ9NRW1 208 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.22□□□□□ -0.77
SS18-205ENST00000542420 GJD2Q9UKL4 321 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 SPTLC1O15269 473 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 NCAM2O15394 837 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 TREHO43280 583 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 OPHN1O60890 802 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 KRT37O76014 449 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 TGDSO95455 350 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 C1QAP02745 245 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 ATP5BP06576 529 aaKnown RBP10.22□□□□□ -0.77
SS18-205ENST00000542420 INHBAP08476 426 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 PTPN1P18031 435 aaKnown RBP10.22□□□□□ -0.77
SS18-205ENST00000542420 RBL1P28749 1068 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 SSTR1P30872 391 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 CCNFP41002 786 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 TAF1CQ15572 869 aaPredicted RBP10.22□□□□□ -0.77
SS18-205ENST00000542420 STXBP5Q5T5C0 1151 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 NPNTQ6UXI9 565 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 TIFABQ6ZNK6 161 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 FAM228AQ86W67 206 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 ANKMY2Q8IV38 441 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 GIMAP7Q8NHV1 300 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 MGARPQ8TDB4 240 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 TMEM40Q8WWA1 233 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 N4BP2L2Q92802 583 aaPredicted RBP10.22□□□□□ -0.77
SS18-205ENST00000542420 APOPT1Q96IL0 206 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 KCTD15Q96SI1 283 aaPredicted RBP10.22□□□□□ -0.77
SS18-205ENST00000542420 DPEP3Q9H4B8 488 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 POPDC2Q9HBU9 364 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 SLC24A3Q9HC58 644 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 SLC40A1Q9NP59 571 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 CNGB3Q9NQW8 809 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 FLRT1Q9NZU1 646 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 CDH9Q9ULB4 789 aa10.22□□□□□ -0.77
SS18-205ENST00000542420 A0A0A0MRY4 1105 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 TCRBV7S3A2A0A539 114 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 TCRBV9S1A1TA0A576 114 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 CHUKO15111 745 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 MTSS1O43312 755 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 CCDC130P13994 396 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 FOXN2P32314 431 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 HTR7P34969 479 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 NEK3P51956 506 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 ZNF33AQ06730 810 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 ADCY1Q08828 1119 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 HIC1Q14526 733 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 CRYMQ14894 314 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 PDK1Q15118 436 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 PRKD1Q15139 912 aaPredicted RBP10.21□□□□□ -0.77
SS18-205ENST00000542420 GPR162Q16538 588 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 ARMC3Q5W041 872 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 NCBP2-AS2Q69YL0 99 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 HEATR6Q6AI08 1181 aaKnown RBP10.21□□□□□ -0.77
SS18-205ENST00000542420 C1orf228Q6PIY5 440 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 ZC3H18Q86VM9 953 aaKnown RBP10.21□□□□□ -0.77
SS18-205ENST00000542420 FUKQ8N0W3 1084 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 SLC2A14Q8TDB8 520 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 TFB1MQ8WVM0 346 aaKnown RBP10.21□□□□□ -0.77
SS18-205ENST00000542420 SPATA13Q96N96 652 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 DHX35Q9H5Z1 703 aaKnown RBP10.21□□□□□ -0.77
SS18-205ENST00000542420 KLC4Q9NSK0 619 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 TXLNGQ9NUQ3 528 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 CPA4Q9UI42 421 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 TTLL3Q9Y4R7 772 aa10.21□□□□□ -0.77
SS18-205ENST00000542420 SQORQ9Y6N5 450 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms