RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 USP46P62068 366 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 GBE1Q04446 702 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 GAD2Q05329 585 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 DEUP1Q05D60 604 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 P3H1Q32P28 736 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 CFAP58Q5T655 872 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 BSPRYQ5W0U4 402 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 CNKSR3Q6P9H4 555 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 ZNF365Q70YC5 407 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 TAC4Q86UU9 113 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 ZC3H18Q86VM9 953 aaKnown RBP12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 ZNF670Q9BS34 389 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 OSER1Q9NX31 292 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 NUDT5Q9UKK9 219 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 SLC27A5Q9Y2P5 690 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 NR2E3Q9Y5X4 410 aa12.76□□□□□ -0.37
AP003559.1-201ENST00000540906 PLXNA3P51805 1871 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 ARHGEF37A1IGU5 675 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 SGK1O00141 431 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 APOL1O14791 398 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 CAPN9O14815 690 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 TRAPPC3O43617 180 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 DGKIO75912 1065 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 IFNB1P01574 187 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 SHBGP04278 402 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 ACRP10323 421 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 RBP3P10745 1247 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 EN2P19622 333 aaPredicted RBP12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 MAPRE1Q15691 268 aaKnown RBP12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 TTMPQ5BVD1 217 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 C4orf50Q6ZRC1 276 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 TP53INP2Q8IXH6 220 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 LRRC43Q8N309 656 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 FAM71DQ8N9W8 422 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 UBLCP1Q8WVY7 318 aaPredicted RBP12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 TMEM175Q9BSA9 504 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 MAK16Q9BXY0 300 aaKnown RBP12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 SEMA4AQ9H3S1 761 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 PRDM5Q9NQX1 630 aaPredicted RBP12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 HEY1Q9Y5J3 304 aa12.75□□□□□ -0.37
AP003559.1-201ENST00000540906 CCDC85CA6NKD9 419 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 HOXA2O43364 376 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 RPL17P18621 184 aaKnown RBP12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 RPL22P35268 128 aaKnown RBP12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 GPS1Q13098 491 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 IKBKEQ14164 716 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 ANKRD22Q5VYY1 191 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 ALS2CLQ60I27 953 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 NCBP2-AS2Q69YL0 99 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 HIBCHQ6NVY1 386 aaPredicted RBP12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 RNF19BQ6ZMZ0 732 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 DCP1BQ8IZD4 617 aaKnown RBP12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 DQX1Q8TE96 717 aaKnown RBP12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 IRGQQ8WZA9 623 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 RC3H2Q9HBD1 1191 aaKnown RBP12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 PNPLA8Q9NP80 782 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 DDIT4Q9NX09 232 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 ANAPC5Q9UJX4 755 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 STAP1Q9ULZ2 295 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 SF3B1O75533 1304 aaKnown RBP eCLIP12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 MTMR11A4FU01 709 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 DNALI1O14645 258 aaPredicted RBP12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 RNF40O75150 1001 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 ITIH2P19823 946 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 ADRA1BP35368 520 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 PMS2P54278 862 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 YWHAGP61981 247 aaKnown RBP eCLIP12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 TFDP2Q14188 446 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 ZNF280DQ6N043 979 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 CCDC25Q86WR0 208 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 MAP7D3Q8IWC1 876 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 SCML4Q8N228 414 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 TTC13Q8NBP0 860 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 UHMK1Q8TAS1 419 aaKnown RBP12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 LRRC45Q96CN5 670 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 MRPL9Q9BYD2 267 aaKnown RBP12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 FAM204AQ9H8W3 233 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 USP29Q9HBJ7 922 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 PCDH9Q9HC56 1237 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 SFMBT1Q9UHJ3 866 aa12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 FEZ2Q9UHY8 353 aaPredicted RBP12.74□□□□□ -0.37
AP003559.1-201ENST00000540906 GREB1Q4ZG55 1949 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 KIAA1671Q9BY89 1806 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 A0A1W2PQH9 124 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 TCRBV7S3A2A0A539 114 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 MCF2LO15068 1137 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 MSI1O43347 362 aaKnown RBP12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 MFSD11O43934 449 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 PARNO95453 639 aaKnown RBP12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 IGLV3-25P01717 112 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 TGM2P21980 687 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 RBL1P28749 1068 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 ZNF844Q08AG5 666 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 CALCOCO2Q13137 446 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 SEMA3BQ13214 749 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 EIF4EBP2Q13542 120 aaPredicted RBP12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 MTMR3Q13615 1198 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 ARTNQ5T4W7 220 aa12.73□□□□□ -0.37
AP003559.1-201ENST00000540906 RNASEH2BQ5TBB1 312 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms