RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 C10orf142B7Z368 130 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 TULP1O00294 542 aaPredicted RBP7.7□□□□□ -1.18
YBX3-209ENST00000540747 NPC1O15118 1278 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 MDM4O15151 490 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 CLIC2O15247 247 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 CYP26A1O43174 497 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 CILPO75339 1184 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 STC2O76061 302 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 NCAM1P13591 858 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 GNSP15586 552 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 PDCP20941 246 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 SYT1P21579 422 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 IL12RB1P42701 662 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 ASPAP45381 313 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 TPMTP51580 245 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 COPAP53621 1224 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 INCA1Q0VD86 236 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 TRPC3Q13507 836 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 NCOA4Q13772 614 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 GEN1Q17RS7 908 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 ZNF699Q32M78 642 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 ZACNQ401N2 412 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 C1orf220Q5T0J3 134 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 SDE2Q6IQ49 451 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 KIAA1324Q6UXG2 1013 aaKnown RBP7.7□□□□□ -1.18
YBX3-209ENST00000540747 TPGS1Q6ZTW0 290 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 CLEC20AQ6ZU45 233 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 SCD5Q86SK9 330 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 ACOT1Q86TX2 421 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 UNC93AQ86WB7 457 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 FAM217AQ8IXS0 508 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 ZCCHC9Q8N567 271 aaKnown RBP7.7□□□□□ -1.18
YBX3-209ENST00000540747 LINC00301Q8NCQ3 95 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 ERLEC1Q96DZ1 483 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 TWNKQ96RR1 684 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 HNRNPABQ99729 332 aaKnown RBP7.7□□□□□ -1.18
YBX3-209ENST00000540747 MED10Q9BTT4 135 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 PCED1AQ9H1Q7 454 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 PNPLA8Q9NP80 782 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 TLR8Q9NR97 1041 aaKnown RBP7.7□□□□□ -1.18
YBX3-209ENST00000540747 CGNQ9P2M7 1197 aaKnown RBP7.7□□□□□ -1.18
YBX3-209ENST00000540747 MTMR6Q9Y217 621 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 APOBEC2Q9Y235 224 aaKnown RBP7.7□□□□□ -1.18
YBX3-209ENST00000540747 RAXQ9Y2V3 346 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 USP3Q9Y6I4 520 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 NUMA1Q14980 2115 aa7.7□□□□□ -1.18
YBX3-209ENST00000540747 MUC22E2RYF6 1773 aaPredicted RBP7.69□□□□□ -1.18
YBX3-209ENST00000540747 ATMQ13315 3056 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 A0A087WV48 116 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 A0A1W2PQH9 124 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 BCAT2O15382 392 aaPredicted RBP7.69□□□□□ -1.18
YBX3-209ENST00000540747 NDUFS2O75306 463 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 ASS1P00966 412 aaKnown RBP7.69□□□□□ -1.18
YBX3-209ENST00000540747 ATXN1LP0C7T5 689 aaKnown RBP7.69□□□□□ -1.18
YBX3-209ENST00000540747 ATP5C1P36542 298 aaKnown RBP7.69□□□□□ -1.18
YBX3-209ENST00000540747 KIF11P52732 1056 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 NDST1P52848 882 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 AP3M2P53677 418 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 MAP3K7CLP57077 242 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 ASIC1P78348 528 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 CEBPZQ03701 1054 aaKnown RBP7.69□□□□□ -1.18
YBX3-209ENST00000540747 ORC1Q13415 861 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 BECN1Q14457 450 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 PTPRNQ16849 979 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 HLA-BQ31612 363 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 ZNF667Q5HYK9 610 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 DCAF12L1Q5VU92 463 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 TMEM215Q68D42 235 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 SHC4Q6S5L8 630 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 SCARA5Q6ZMJ2 495 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 UNC13DQ70J99 1090 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 CCDC186Q7Z3E2 898 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 SLC9A9Q8IVB4 645 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 NELFCDQ8IXH7 590 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 RGL4Q8IZJ4 473 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 C12orf29Q8N999 325 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 ORAI3Q9BRQ5 295 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 GPR174Q9BXC1 333 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 LRRC27Q9C0I9 530 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 GAREM1Q9H706 876 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 PRDM16Q9HAZ2 1276 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 OSGEPQ9NPF4 335 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.69□□□□□ -1.18
YBX3-209ENST00000540747 TM7SF3Q9NS93 570 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 PLK2Q9NYY3 685 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 DNMT3LQ9UJW3 386 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 LSM7Q9UK45 103 aaKnown RBP7.69□□□□□ -1.18
YBX3-209ENST00000540747 CLEC4EQ9ULY5 219 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 BTBD3Q9Y2F9 522 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 PCDHB9Q9Y5E1 797 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 PCDHA5Q9Y5H7 936 aa7.69□□□□□ -1.18
YBX3-209ENST00000540747 PVALEFA0A1B0GWK0 134 aa7.68□□□□□ -1.18
YBX3-209ENST00000540747 MEI4A8MW99 385 aa7.68□□□□□ -1.18
YBX3-209ENST00000540747 FLRT2O43155 660 aa7.68□□□□□ -1.18
YBX3-209ENST00000540747 ZBTB24O43167 697 aaPredicted RBP7.68□□□□□ -1.18
YBX3-209ENST00000540747 PAPSS1O43252 624 aaPredicted RBP7.68□□□□□ -1.18
YBX3-209ENST00000540747 KLRC4O43908 158 aa7.68□□□□□ -1.18
YBX3-209ENST00000540747 PPP6R2O75170 966 aa7.68□□□□□ -1.18
YBX3-209ENST00000540747 CER1O95813 267 aa7.68□□□□□ -1.18
YBX3-209ENST00000540747 RPN1P04843 607 aaKnown RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms