RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 PGBD1Q96JS3 809 aa5.76□□□□□ -1.49
CD44-236ENST00000533222 MAELQ96JY0 434 aaKnown RBP5.76□□□□□ -1.49
CD44-236ENST00000533222 SIGLEC10Q96LC7 697 aa5.76□□□□□ -1.49
CD44-236ENST00000533222 GBP5Q96PP8 586 aa5.76□□□□□ -1.49
CD44-236ENST00000533222 CARD6Q9BX69 1037 aa5.76□□□□□ -1.49
CD44-236ENST00000533222 KRT23Q9C075 422 aa5.76□□□□□ -1.49
CD44-236ENST00000533222 C6orf62Q9GZU0 229 aaPredicted RBP5.76□□□□□ -1.49
CD44-236ENST00000533222 MS4A5Q9H3V2 200 aa5.76□□□□□ -1.49
CD44-236ENST00000533222 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.76□□□□□ -1.49
CD44-236ENST00000533222 OXSMQ9NWU1 459 aa5.76□□□□□ -1.49
CD44-236ENST00000533222 KCNN3Q9UGI6 736 aa5.76□□□□□ -1.49
CD44-236ENST00000533222 SLC12A4Q9UP95 1085 aa5.76□□□□□ -1.49
CD44-236ENST00000533222 SMG5Q9UPR3 1016 aaKnown RBP5.76□□□□□ -1.49
CD44-236ENST00000533222 ANGPTL3Q9Y5C1 460 aa5.76□□□□□ -1.49
CD44-236ENST00000533222 EPN1Q9Y6I3 576 aaPredicted RBP5.76□□□□□ -1.49
CD44-236ENST00000533222 AK9Q5TCS8 1911 aa5.76□□□□□ -1.49
CD44-236ENST00000533222 MROH5Q6ZUA9 1318 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 ADGRL3Q9HAR2 1447 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 EFCAB6Q5THR3 1501 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 TRAV6A0A075B6T7 132 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 CYP2D7A0A087X1C5 515 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 CCDC69A6NI79 296 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 PI4K2BG5E9Z4 385 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 PSMD9O00233 223 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 FBP2O00757 339 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 NDUFA2O43678 99 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 SPOPO43791 374 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 GPC4O75487 556 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 OXSR1O95747 527 aaPredicted RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 CD4P01730 458 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 HLA-DRAP01903 254 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 ABCB1P08183 1280 aaPredicted RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 SCG2P13521 617 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 PTX3P26022 381 aaPredicted RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 SOX5P35711 763 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 HNRNPFP52597 415 aaKnown RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 POLGP54098 1239 aaPredicted RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 HSD17B7P56937 341 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 POLR2GP62487 172 aaKnown RBP eCLIP5.75□□□□□ -1.49
CD44-236ENST00000533222 PLIN5Q00G26 463 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 PFKPQ01813 784 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 OCRLQ01968 901 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 LRMPQ12912 555 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 PPP2R5CQ13362 524 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 SMAD4Q13485 552 aaKnown RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 PRKG1Q13976 671 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 NFE2Q16621 373 aaPredicted RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 LETM2Q2VYF4 491 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 HSP90AA5PQ58FG0 334 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 PPP6R3Q5H9R7 873 aaPredicted RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 AARS2Q5JTZ9 985 aaKnown RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 KRBOX4Q5JUW0 171 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 SLX4IPQ5VYV7 408 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 FAM109BQ6ICB4 259 aaPredicted RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 HIBCHQ6NVY1 386 aaPredicted RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 BORAQ6PGQ7 559 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 CRTC1Q6UUV9 634 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 USP50Q70EL3 339 aaPredicted RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 GALNT7Q86SF2 657 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 ADAMTSL2Q86TH1 951 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 FAM129CQ86XR2 697 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 SLC44A2Q8IWA5 706 aaPredicted RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 PM20D2Q8IYS1 436 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 AHI1Q8N157 1196 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 ENDOVQ8N8Q3 282 aaKnown RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 KBTBD3Q8NAB2 608 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 SUPT20HQ8NEM7 779 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 MYCBPAPQ8TBZ2 947 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 CALML6Q8TD86 181 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 ZNF473Q8WTR7 871 aaKnown RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 CCT6BQ92526 530 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 ANKS1AQ92625 1134 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 METTL2AQ96IZ6 378 aaKnown RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 SPATA17Q96L03 361 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 MED15Q96RN5 788 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 NUDCD1Q96RS6 583 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 KIFC3Q9BVG8 833 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 VPS11Q9H270 941 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 RAD21L1Q9H4I0 556 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 MROH8Q9H579 483 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 DENND2DQ9H6A0 471 aaPredicted RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 ANKZF1Q9H8Y5 726 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 UBN1Q9NPG3 1134 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 SDHAF3Q9NRP4 125 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 KCNH7Q9NS40 1196 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 FARSBQ9NSD9 589 aaKnown RBP5.75□□□□□ -1.49
CD44-236ENST00000533222 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.75□□□□□ -1.49
CD44-236ENST00000533222 TRPM5Q9NZQ8 1165 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 THEGQ9P2T0 379 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 HSFX1Q9UBD0 423 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 LAMP5Q9UJQ1 280 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 CDC23Q9UJX2 597 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.75□□□□□ -1.49
CD44-236ENST00000533222 HPCAL4Q9UM19 191 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 DDX19BQ9UMR2 479 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 DNM3Q9UQ16 869 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 DNAJC16Q9Y2G8 782 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 NOX1Q9Y5S8 564 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 IRAK3Q9Y616 596 aa5.75□□□□□ -1.49
CD44-236ENST00000533222 MROH7-TTC4A0A0A0MT08 1334 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms