RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 FAM90A2PQ658T7 463 aa5.47□□□□□ -1.53
CD44-223ENST00000526553 ARL6IP4Q66PJ3 421 aaKnown RBP5.47□□□□□ -1.53
CD44-223ENST00000526553 MIS18BP1Q6P0N0 1132 aa5.47□□□□□ -1.53
CD44-223ENST00000526553 OVCA2Q8WZ82 227 aa5.47□□□□□ -1.53
CD44-223ENST00000526553 KIAA1191Q96A73 305 aa5.47□□□□□ -1.53
CD44-223ENST00000526553 FAM118BQ9BPY3 351 aa5.47□□□□□ -1.53
CD44-223ENST00000526553 QTRT1Q9BXR0 403 aaKnown RBP5.47□□□□□ -1.53
CD44-223ENST00000526553 STK33Q9BYT3 514 aa5.47□□□□□ -1.53
CD44-223ENST00000526553 SAP30LQ9HAJ7 183 aa5.47□□□□□ -1.53
CD44-223ENST00000526553 NLRC4Q9NPP4 1024 aa5.47□□□□□ -1.53
CD44-223ENST00000526553 PDGFCQ9NRA1 345 aa5.47□□□□□ -1.53
CD44-223ENST00000526553 FNIP2Q9P278 1114 aa5.47□□□□□ -1.53
CD44-223ENST00000526553 PCDHGB2Q9Y5G2 931 aa5.47□□□□□ -1.53
CD44-223ENST00000526553 CYP2D7A0A087X1C5 515 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 SMIM35A0A1B0GVV1 85 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 INO80B-WBP1J3KQ70 363 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 FYB1O15117 783 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 PLA2G6O60733 806 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 BCAR3O75815 825 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 GLP2RO95838 553 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 DRD1P21728 446 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 GALNSP34059 522 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 JAK3P52333 1124 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 ZNF268Q14587 947 aaPredicted RBP5.46□□□□□ -1.54
CD44-223ENST00000526553 SUPT20HL1Q3ZLR7 823 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 ARHGAP15Q53QZ3 475 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 AWAT1Q58HT5 328 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 MTX3Q5HYI7 312 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 TMEM196Q5HYL7 178 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 TMTC4Q5T4D3 741 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 ZNF626Q68DY1 528 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 RANBP10Q6VN20 620 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.46□□□□□ -1.54
CD44-223ENST00000526553 PRR11Q96HE9 360 aaPredicted RBP5.46□□□□□ -1.54
CD44-223ENST00000526553 SH2D3AQ9BRG2 576 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 C1QTNF7Q9BXJ2 289 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 ADGRE3Q9BY15 652 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 RNF26Q9BY78 433 aaPredicted RBP5.46□□□□□ -1.54
CD44-223ENST00000526553 PRSS22Q9GZN4 317 aa5.46□□□□□ -1.54
CD44-223ENST00000526553 ZNF70Q9UC06 446 aaPredicted RBP5.46□□□□□ -1.54
CD44-223ENST00000526553 SCAF8Q9UPN6 1271 aaKnown RBP5.46□□□□□ -1.54
CD44-223ENST00000526553 DSCR3O14972 297 aa5.45□□□□□ -1.54
CD44-223ENST00000526553 DHHO43323 396 aa5.45□□□□□ -1.54
CD44-223ENST00000526553 IFIT2P09913 472 aaKnown RBP5.45□□□□□ -1.54
CD44-223ENST00000526553 MATN1P21941 496 aa5.45□□□□□ -1.54
CD44-223ENST00000526553 MMP8P22894 467 aa5.45□□□□□ -1.54
CD44-223ENST00000526553 RAE1P78406 368 aaKnown RBP5.45□□□□□ -1.54
CD44-223ENST00000526553 SLC14A1Q13336 389 aa5.45□□□□□ -1.54
CD44-223ENST00000526553 DAZAP2Q15038 168 aaPredicted RBP5.45□□□□□ -1.54
CD44-223ENST00000526553 RAB30Q15771 203 aa5.45□□□□□ -1.54
CD44-223ENST00000526553 CC2D1BQ5T0F9 858 aaKnown RBP5.45□□□□□ -1.54
CD44-223ENST00000526553 C1QL2Q7Z5L3 287 aa5.45□□□□□ -1.54
CD44-223ENST00000526553 OSR1Q8TAX0 266 aaPredicted RBP5.45□□□□□ -1.54
CD44-223ENST00000526553 CHST12Q9NRB3 414 aa5.45□□□□□ -1.54
CD44-223ENST00000526553 HELLSQ9NRZ9 838 aa5.45□□□□□ -1.54
CD44-223ENST00000526553 BTBD3Q9Y2F9 522 aa5.45□□□□□ -1.54
CD44-223ENST00000526553 DTNAQ9Y4J8 743 aa5.45□□□□□ -1.54
CD44-223ENST00000526553 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.44□□□□□ -1.54
CD44-223ENST00000526553 CCDC194A0A1B0GVG4 234 aa5.44□□□□□ -1.54
CD44-223ENST00000526553 ABCB4P21439 1286 aa5.44□□□□□ -1.54
CD44-223ENST00000526553 SFPQP23246 707 aaKnown RBP eCLIP5.44□□□□□ -1.54
CD44-223ENST00000526553 DUSP1P28562 367 aa5.44□□□□□ -1.54
CD44-223ENST00000526553 ARHGAP25P42331 645 aa5.44□□□□□ -1.54
CD44-223ENST00000526553 WDR5P61964 334 aaKnown RBP5.44□□□□□ -1.54
CD44-223ENST00000526553 SEC23BQ15437 767 aa5.44□□□□□ -1.54
CD44-223ENST00000526553 CCDC144NLQ6NUI1 221 aa5.44□□□□□ -1.54
CD44-223ENST00000526553 RASGRP3Q8IV61 690 aa5.44□□□□□ -1.54
CD44-223ENST00000526553 ACRBPQ8NEB7 543 aa5.44□□□□□ -1.54
CD44-223ENST00000526553 MAP4K1Q92918 833 aa5.44□□□□□ -1.54
CD44-223ENST00000526553 ABHD10Q9NUJ1 306 aa5.44□□□□□ -1.54
CD44-223ENST00000526553 KLHL13Q9P2N7 655 aa5.44□□□□□ -1.54
CD44-223ENST00000526553 SLC39A10Q9ULF5 831 aa5.44□□□□□ -1.54
CD44-223ENST00000526553 WDR91A4D1P6 747 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 E5RJQ4 531 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 FCHO1O14526 889 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 SRGAP2BP0DMP2 458 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 ATP5F1P24539 256 aaPredicted RBP5.43□□□□□ -1.54
CD44-223ENST00000526553 IGHMBP2P38935 993 aaKnown RBP5.43□□□□□ -1.54
CD44-223ENST00000526553 GSTM5P46439 218 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 SEMA3BQ13214 749 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 BFSP2Q13515 415 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 HDAC1Q13547 482 aaPredicted RBP5.43□□□□□ -1.54
CD44-223ENST00000526553 XRRA1Q6P2D8 792 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 PIK3AP1Q6ZUJ8 805 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 C16orf71Q8IYS4 520 aaPredicted RBP5.43□□□□□ -1.54
CD44-223ENST00000526553 TMEM41AQ96HV5 264 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 NUAK2Q9H093 628 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 ARFGAP3Q9NP61 516 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 PCDHB2Q9Y5E7 798 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 TNFRSF18Q9Y5U5 241 aa5.43□□□□□ -1.54
CD44-223ENST00000526553 ARID4BQ4LE39 1312 aaPredicted RBP5.43□□□□□ -1.54
CD44-223ENST00000526553 GXYLT2A0PJZ3 443 aa5.42□□□□□ -1.54
CD44-223ENST00000526553 PCDH17O14917 1159 aa5.42□□□□□ -1.54
CD44-223ENST00000526553 CTIFO43310 598 aaKnown RBP5.42□□□□□ -1.54
CD44-223ENST00000526553 NTSR2O95665 410 aa5.42□□□□□ -1.54
CD44-223ENST00000526553 TACR3P29371 465 aa5.42□□□□□ -1.54
CD44-223ENST00000526553 PPM1AP35813 382 aa5.42□□□□□ -1.54
CD44-223ENST00000526553 HTR3AP46098 478 aa5.42□□□□□ -1.54
CD44-223ENST00000526553 CSHL1Q14406 222 aa5.42□□□□□ -1.54
CD44-223ENST00000526553 CNGA3Q16281 694 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms