RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SLC7A9P82251 487 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 ZXDBP98169 803 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 CREB5Q02930 508 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 PTK2Q05397 1052 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 BST2Q10589 180 aaKnown RBP10.65□□□□□ -0.7
VPS28-204ENST00000526054 TAF10Q12962 218 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 DRAP1Q14919 205 aaPredicted RBP10.65□□□□□ -0.7
VPS28-204ENST00000526054 CNGA2Q16280 664 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 MEA1Q16626 185 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 C2orf27AQ580R0 203 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 STPG1Q5TH74 334 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 TCEAL6Q6IPX3 200 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 ANO7Q6IWH7 933 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 LCLAT1Q6UWP7 414 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 RNF214Q8ND24 703 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 PDZD8Q8NEN9 1154 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 ZMIZ2Q8NF64 920 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 USP33Q8TEY7 942 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 TCEAL3Q969E4 200 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 SPAG5Q96R06 1193 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 EDEM2Q9BV94 578 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 NAA15Q9BXJ9 866 aaKnown RBP10.65□□□□□ -0.7
VPS28-204ENST00000526054 TPSD1Q9BZJ3 242 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 DUSP15Q9H1R2 295 aaPredicted RBP10.65□□□□□ -0.7
VPS28-204ENST00000526054 FBXO44Q9H4M3 255 aa10.65□□□□□ -0.7
VPS28-204ENST00000526054 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.65□□□□□ -0.7
VPS28-204ENST00000526054 CFAP47Q6ZTR5 3102 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 F8VZ95 297 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 K7EQS6 105 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 FOXN3O00409 490 aaPredicted RBP10.64□□□□□ -0.71
VPS28-204ENST00000526054 XPO1O14980 1071 aaKnown RBP10.64□□□□□ -0.71
VPS28-204ENST00000526054 CYP26A1O43174 497 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 TEX33O43247 280 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 CBFA2T2O43439 604 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 BEST1O76090 585 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 ADH1CP00326 375 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 MBL2P11226 248 aaPredicted RBP10.64□□□□□ -0.71
VPS28-204ENST00000526054 STAT1P42224 750 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 GAB4Q2WGN9 574 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 RNF43Q68DV7 783 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 C11orf74Q86VG3 221 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 TTC30AQ86WT1 665 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 DDX42Q86XP3 938 aaKnown RBP eCLIP10.64□□□□□ -0.71
VPS28-204ENST00000526054 FMNL3Q8IVF7 1028 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 FAM71AQ8IYT1 594 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 KIAA1958Q8N8K9 716 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 OVCA2Q8WZ82 227 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 TFAP2BQ92481 460 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 FBXO32Q969P5 355 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 UBXN6Q9BZV1 441 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 RNF38Q9H0F5 515 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 NLRC4Q9NPP4 1024 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 CFAP97Q9P2B7 532 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 MMP17Q9ULZ9 603 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 THADAQ6YHU6 1953 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 LAMA1P25391 3075 aa10.64□□□□□ -0.71
VPS28-204ENST00000526054 BCLAF3A2AJT9 711 aaKnown RBP10.63□□□□□ -0.71
VPS28-204ENST00000526054 TNFRSF10BO14763 440 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 EPHB6O15197 1021 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 PNMA6AP0CW24 399 aaPredicted RBP10.63□□□□□ -0.71
VPS28-204ENST00000526054 EIF2DP41214 584 aaKnown RBP10.63□□□□□ -0.71
VPS28-204ENST00000526054 PLA2G4AP47712 749 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 JAM2P57087 298 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 KDSRQ06136 332 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 PDE4CQ08493 712 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 NR1I3Q14994 352 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 DHCR24Q15392 516 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 CRY1Q16526 586 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 ST3GAL2Q16842 350 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 USP39Q53GS9 565 aaKnown RBP10.63□□□□□ -0.71
VPS28-204ENST00000526054 PMS2CLQ68D20 193 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 PIGZQ86VD9 579 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 RASSF3Q86WH2 238 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 CCDC33Q8N5R6 958 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 MDGA1Q8NFP4 955 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 SCAMP5Q8TAC9 235 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 UBA3Q8TBC4 463 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 ZNF606Q8WXB4 792 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 NAP1L5Q96NT1 182 aaPredicted RBP10.63□□□□□ -0.71
VPS28-204ENST00000526054 ZSWIM1Q9BR11 485 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 LRRC4Q9HBW1 653 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 IL37Q9NZH6 218 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 IFNKQ9P0W0 207 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 ANGPTL2Q9UKU9 493 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 INVSQ9Y283 1065 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 CEP83Q9Y592 693 aa10.63□□□□□ -0.71
VPS28-204ENST00000526054 MYOFQ9NZM1 2061 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 PLXND1Q9Y4D7 1925 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 LNP1A1A4G5 178 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 FAM92AA1XBS5 289 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.62□□□□□ -0.71
VPS28-204ENST00000526054 HHLA1C9JL84 531 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 TM4SF5O14894 197 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 KRT37O76014 449 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 ALDH1A2O94788 518 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 KAT7O95251 611 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 CALCAP01258 141 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 APODP05090 189 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 CCDC172P0C7W6 258 aa10.62□□□□□ -0.71
VPS28-204ENST00000526054 ADH5P11766 374 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms