RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 PIGOQ8TEQ8 1089 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 PHKBQ93100 1093 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 TIFAQ96CG3 184 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 ZDHHC12Q96GR4 267 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 PRR11Q96HE9 360 aaPredicted RBP2.79□□□□□ -1.96
CD44-216ENST00000525293 KAZALD1Q96I82 304 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 SELENOOQ9BVL4 669 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 BRIP1Q9BX63 1249 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 TMX4Q9H1E5 349 aaPredicted RBP2.79□□□□□ -1.96
CD44-216ENST00000525293 NUP62CLQ9H1M0 184 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 PRDM11Q9NQV5 511 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 TMEM184CQ9NVA4 438 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 TMEM51Q9NW97 253 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 MTMR4Q9NYA4 1195 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 RGS17Q9UGC6 210 aaPredicted RBP2.79□□□□□ -1.96
CD44-216ENST00000525293 VPS51Q9UID3 782 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 FZD4Q9ULV1 537 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 MAFFQ9ULX9 164 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 CORO2BQ9UQ03 480 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 COL15A1P39059 1388 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 RHPN2P1A8MT19 583 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 ANP32CO43423 234 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 TLR2O60603 784 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 PQBP1O60828 265 aaKnown RBP2.78□□□□□ -1.96
CD44-216ENST00000525293 PRF1P14222 555 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 RPL17P18621 184 aaKnown RBP2.78□□□□□ -1.96
CD44-216ENST00000525293 ATICP31939 592 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 GALNSP34059 522 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 POLGP54098 1239 aaPredicted RBP2.78□□□□□ -1.96
CD44-216ENST00000525293 YPEL5P62699 121 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 ID2Q02363 134 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 CCDC15Q0P6D6 951 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 LMOD3Q0VAK6 560 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 MAPK7Q13164 816 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 FHL1Q13642 323 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 FHL3Q13643 280 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 LAMB3Q13751 1172 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 CLCA4Q14CN2 919 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 PFKFB3Q16875 520 aaPredicted RBP2.78□□□□□ -1.96
CD44-216ENST00000525293 TRIM71Q2Q1W2 868 aaKnown RBP2.78□□□□□ -1.96
CD44-216ENST00000525293 WDR78Q5VTH9 848 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 ANO7Q6IWH7 933 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 BHLHA9Q7RTU4 235 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 IRF2BP2Q7Z5L9 587 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 FMNL3Q8IVF7 1028 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 HIC2Q96JB3 615 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 FAM227BQ96M60 508 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 CINPQ9BW66 212 aaPredicted RBP2.78□□□□□ -1.96
CD44-216ENST00000525293 ADGRE3Q9BY15 652 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 UNKQ9C0B0 810 aaKnown RBP2.78□□□□□ -1.96
CD44-216ENST00000525293 BTBD1Q9H0C5 482 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 ZCWPW1Q9H0M4 648 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 SLC25A32Q9H2D1 315 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 FOXP1Q9H334 677 aaPredicted RBP2.78□□□□□ -1.96
CD44-216ENST00000525293 SAP30LQ9HAJ7 183 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 HEYLQ9NQ87 328 aaPredicted RBP2.78□□□□□ -1.96
CD44-216ENST00000525293 VPS45Q9NRW7 570 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 FBXO9Q9UK97 447 aaPredicted RBP2.78□□□□□ -1.96
CD44-216ENST00000525293 VPS4AQ9UN37 437 aa2.78□□□□□ -1.96
CD44-216ENST00000525293 CCDC189A1A4V9 331 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 KRTAP29-1A8MX34 341 aaPredicted RBP2.77□□□□□ -1.97
CD44-216ENST00000525293 THAP12O43422 761 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 WDR47O94967 919 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 IL18RAPO95256 599 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 NTN1O95631 604 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 TMEM191BP0C7N4 346 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 TMIGD3P0DMS9 266 aaPredicted RBP2.77□□□□□ -1.97
CD44-216ENST00000525293 CTSAP10619 480 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 TACR3P29371 465 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 HTR7P34969 479 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 PIK3CBP42338 1070 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 JAK3P52333 1124 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 KRTAP10-9P60411 292 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 RPS13P62277 151 aaKnown RBP2.77□□□□□ -1.97
CD44-216ENST00000525293 CFHR1Q03591 330 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 MTAPQ13126 283 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 STIM1Q13586 685 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 DNASE1L3Q13609 305 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 DAG1Q14118 895 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 KPNB1Q14974 876 aaKnown RBP2.77□□□□□ -1.97
CD44-216ENST00000525293 FAM110CQ1W6H9 321 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 KLHDC7AQ5VTJ3 777 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.77□□□□□ -1.97
CD44-216ENST00000525293 KRT28Q7Z3Y7 464 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 SUGP2Q8IX01 1082 aaKnown RBP eCLIP2.77□□□□□ -1.97
CD44-216ENST00000525293 CCDC146Q8IYE0 955 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 TTC30BQ8N4P2 665 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 NGEFQ8N5V2 710 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 MBD3L2Q8NHZ7 208 aaPredicted RBP2.77□□□□□ -1.97
CD44-216ENST00000525293 SUN3Q8TAQ9 357 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 IQCDQ96DY2 449 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 LRRC46Q96FV0 321 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 NUAK2Q9H093 628 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 PNPLA8Q9NP80 782 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 HEMK1Q9Y5R4 338 aaPredicted RBP2.77□□□□□ -1.97
CD44-216ENST00000525293 COMMD10Q9Y6G5 202 aa2.77□□□□□ -1.97
CD44-216ENST00000525293 ZMYM2Q9UBW7 1377 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 CACNA1IQ9P0X4 2223 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 A0A087WZ62 844 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 LY6G6EA0A0G2JKS1 128 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms