RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.04□□□□□ -0.32
USP53-209ENST00000514665 AGAP11Q8TF27 550 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 TCF7L2Q9NQB0 619 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 A0A096LPK6 155 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 C17orf102A2RUQ5 167 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 FSCN2O14926 492 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 SPTLC1O15269 473 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 LIASO43766 372 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 THP07101 528 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 NUDT17P0C025 328 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 CYLC2Q14093 348 aaPredicted RBP13.04□□□□□ -0.32
USP53-209ENST00000514665 KPNB1Q14974 876 aaKnown RBP13.04□□□□□ -0.32
USP53-209ENST00000514665 QPCTQ16769 361 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 AGKQ53H12 422 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 HYIQ5T013 277 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 ISLR2Q6UXK2 745 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 APTXQ7Z2E3 356 aaKnown RBP13.04□□□□□ -0.32
USP53-209ENST00000514665 CNPY4Q8N129 248 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 DNAJB3Q8WWF6 145 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 BTBD10Q9BSF8 475 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 TTYH3Q9C0H2 523 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 ASCC2Q9H1I8 757 aaPredicted RBP13.04□□□□□ -0.32
USP53-209ENST00000514665 GPAMQ9HCL2 828 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 NT5MQ9NPB1 228 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 DDX43Q9NXZ2 648 aaKnown RBP13.04□□□□□ -0.32
USP53-209ENST00000514665 NCKIPSDQ9NZQ3 722 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 PRKAG2Q9UGJ0 569 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 HES2Q9Y543 173 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 ASTN2O75129 1339 aaPredicted RBP13.04□□□□□ -0.32
USP53-209ENST00000514665 TMCC1O94876 653 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 ODC1P11926 461 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 NOMO3P69849 1222 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 TBL3Q12788 808 aaKnown RBP13.04□□□□□ -0.32
USP53-209ENST00000514665 MMRN1Q13201 1228 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 TRMT5Q32P41 509 aaKnown RBP13.04□□□□□ -0.32
USP53-209ENST00000514665 MRNIPQ6NTE8 343 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 PTAR1Q7Z6K3 402 aaPredicted RBP13.04□□□□□ -0.32
USP53-209ENST00000514665 NEUROG2Q9H2A3 272 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 SCHIP1Q9P0W5 487 aaPredicted RBP13.04□□□□□ -0.32
USP53-209ENST00000514665 ITGA11Q9UKX5 1188 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 NR2E1Q9Y466 385 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 DCDC2CA8MYV0 355 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 PRRG1O14668 218 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 PTPRAP18433 802 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 SLC1A6P48664 564 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 MARSP56192 900 aaKnown RBP13.03□□□□□ -0.32
USP53-209ENST00000514665 LRRC74AQ0VAA2 488 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 EFEMP1Q12805 493 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 PTK2BQ14289 1009 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 ZNF786Q8N393 782 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 TDRD5Q8NAT2 981 aaKnown RBP13.03□□□□□ -0.32
USP53-209ENST00000514665 THUMPD3Q9BV44 507 aaKnown RBP13.03□□□□□ -0.32
USP53-209ENST00000514665 PDP2Q9P2J9 529 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 VAPBO95292 243 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 GJB1P08034 283 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 PAEPP09466 180 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 PLK1P53350 603 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 GRIK4Q16099 956 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 TTC33Q6PID6 262 aaPredicted RBP13.03□□□□□ -0.32
USP53-209ENST00000514665 TFAP2DQ7Z6R9 452 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 RAET1EQ8TD07 263 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 ART4Q93070 314 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 CATSPER2Q96P56 530 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 SYT15Q9BQS2 421 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 PTPRHQ9HD43 1115 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 CYP39A1Q9NYL5 469 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 SOX13Q9UN79 622 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 R3HDM2Q9Y2K5 976 aaKnown RBP13.03□□□□□ -0.32
USP53-209ENST00000514665 ERI2A8K979 691 aaKnown RBP13.03□□□□□ -0.32
USP53-209ENST00000514665 SERPINE1P05121 402 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 NFICP08651 508 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 SNHG28P0DPA3 235 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 CNTFP26441 200 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 RGS4P49798 205 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 CPT1AP50416 773 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 STKLD1Q8NE28 680 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 CENPTQ96BT3 561 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 THAP1Q9NVV9 213 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 NUDT5Q9UKK9 219 aa13.03□□□□□ -0.32
USP53-209ENST00000514665 RBAK-RBAKDNI3L0D1 243 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 TRIM13O60858 407 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 CCDC130P13994 396 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 SLC6A3Q01959 620 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 ZBTB17Q13105 803 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 MAPRE1Q15691 268 aaKnown RBP13.02□□□□□ -0.32
USP53-209ENST00000514665 ELMOD1Q8N336 334 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 VPS50Q96JG6 964 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 ECSITQ9BQ95 431 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 A0A0B4J269 797 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 FAM237BA0A1B0GVD1 139 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 SIGLEC16A6NMB1 481 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 FOXO6A8MYZ6 492 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 POMCP01189 267 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 HARS2P49590 506 aaKnown RBP13.02□□□□□ -0.32
USP53-209ENST00000514665 HDAC4P56524 1084 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 DDX39BQ13838 428 aaKnown RBP13.02□□□□□ -0.32
USP53-209ENST00000514665 CAPSQ13938 189 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 SPDYCQ5MJ68 293 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 POLNQ7Z5Q5 900 aa13.02□□□□□ -0.32
USP53-209ENST00000514665 KIAA0319LQ8IZA0 1049 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms