RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 KYQ8NBH2 561 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 TRAPPC12Q8WVT3 735 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 EBF2Q9HAK2 575 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 ORC6Q9Y5N6 252 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 H2AFYO75367 372 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 NSUN2Q08J23 767 aaKnown RBP eCLIP8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 GRM1Q13255 1194 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 MPP3Q13368 585 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 UBAP2LQ14157 1087 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 ANKS1BQ7Z6G8 1248 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 ATPAF2Q8N5M1 289 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 SLC44A1Q8WWI5 657 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 TRPC5OSA6NMA1 111 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 VTNP04004 478 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 PGK2P07205 417 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 PGAM1P18669 254 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 OAZ1P54368 228 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 EN1Q05925 392 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 STX5Q13190 355 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 PTPN20Q4JDL3 420 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 KHDC1Q4VXA5 237 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 SCN4BQ8IWT1 228 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 ULK2Q8IYT8 1036 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 LRRN4Q8WUT4 740 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 USP13Q92995 863 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 AKT1S1Q96B36 256 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 IFT43Q96FT9 208 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 RABGEF1Q9UJ41 708 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 SORCS3Q9UPU3 1222 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 MYPNQ86TC9 1320 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 C4AP0C0L4 1744 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 C4BP0C0L5 1744 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 DPPA5A6NC42 116 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 TPP1O14773 563 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 SH3BP5O60239 455 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 TBC1D12O60347 775 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 SLC25A27O95847 323 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 MYL3P08590 195 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 RARBP10826 455 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 NCAM1P13591 858 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 NR2C2P49116 596 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 BCAT1P54687 386 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 HDAC4P56524 1084 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 ZBTB41Q5SVQ8 909 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 GRAMD4Q6IC98 578 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 PCYOX1LQ8NBM8 494 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 PLEKHO2Q8TD55 490 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 DDI1Q8WTU0 396 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 GFM2Q969S9 779 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 THAP11Q96EK4 314 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 SLC10A4Q96EP9 437 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 FAM193BQ96PV7 902 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 GPR88Q9GZN0 384 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 ZNF711Q9Y462 761 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 MYH10P35580 1976 aa8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 ZNF142P52746 1687 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-216ENST00000512820 TRIM13O60858 407 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 CST3P01034 146 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 TPBGLP0DKB5 382 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 RPS12P25398 132 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 CCNHP51946 323 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 SLC6A3Q01959 620 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 CCDC153Q494R4 210 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 IFNEQ86WN2 208 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 CADM1Q9BY67 442 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 MTFR1LQ9H019 292 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 APOBEC3GQ9HC16 384 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 XPNPEP3Q9NQH7 507 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 MRGBPQ9NV56 204 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 ARHGAP28Q9P2N2 729 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 EFR3BQ9Y2G0 817 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 LAMB4A4D0S4 1761 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 LAMA4Q16363 1823 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 TGFB3P10600 412 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 PSMC3P17980 439 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 TFE3P19532 575 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 CRADDP78560 199 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 SPRED3Q2MJR0 410 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 GRTP1Q5TC63 336 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 BTBD8Q5XKL5 378 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 FBXO16Q8IX29 292 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 LMO3Q8TAP4 145 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 CXorf38Q8TB03 319 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 GIPC2Q8TF65 315 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 CD101Q93033 1021 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 TRAPPC9Q96Q05 1148 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 ASB7Q9H672 318 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 IL1RL2Q9HB29 575 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 SSU72Q9NP77 194 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 ITGA11Q9UKX5 1188 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 VANGL2Q9ULK5 521 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 NFASCO94856 1347 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 A0A096LPK6 155 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 ABLIM1O14639 778 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 LRCH4O75427 683 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 FAM155BO75949 473 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 SERPINA6P08185 405 aa8.65□□□□□ -1.02
LIMCH1-216ENST00000512820 GFAPP14136 432 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms