RNA–Protein interactions for RNA: ENST00000498077.6

XRN1-214, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 5

Gene XRN1, Length 5,600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-214ENST00000498077 USP17L11C9JVI0 530 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 USP17L21D6R901 530 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 USP17L18D6R9N7 530 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 USP17L22D6RA61 530 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 USP17L17D6RBQ6 530 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 USP17L19D6RCP7 530 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 USP17L20D6RJB6 530 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 NPIPB8E9PQR5 432 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 TIMM44O43615 452 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 CHMP2AO43633 222 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 TCF21O43680 179 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 GCNT3O95395 438 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 NFKB1P19838 968 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 JAK1P23458 1154 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 ITPKAP23677 461 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 NPY1RP25929 384 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 GDF5P43026 501 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 SLC6A8P48029 635 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 FKBP1BP68106 108 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 TAP1Q03518 808 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 SRSF4Q08170 494 aaKnown RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 ZNF543Q08ER8 600 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 USP17L24Q0WX57 530 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 MERTKQ12866 999 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 RASA3Q14644 834 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 LETM2Q2VYF4 491 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 SPDYE7PQ495Y7 208 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 USP39Q53GS9 565 aaKnown RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 ODR4Q5SWX8 454 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 NEK5Q6P3R8 708 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 LRRC55Q6ZSA7 311 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 CYB5R4Q7L1T6 521 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 LIMS2Q7Z4I7 341 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 SULF2Q8IWU5 870 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 ZSCAN29Q8IWY8 852 aaPredicted RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 MSRB3Q8IXL7 192 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 NLGN1Q8N2Q7 840 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 PHTF2Q8N3S3 785 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 TTLL6Q8N841 843 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 TMEM116Q8NCL8 245 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 BBOF1Q8ND07 529 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 SVIPQ8NHG7 77 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 SEPT1Q8WYJ6 367 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 C8orf49Q96NF6 230 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 HIST1H2AAQ96QV6 131 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 WDR24Q96S15 920 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 HAUS7Q99871 368 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 ISCA1Q9BUE6 129 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 NOC4LQ9BVI4 516 aaKnown RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 BRD9Q9H8M2 597 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 C14orf93Q9H972 538 aaKnown RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 KCNK9Q9NPC2 374 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 RPRD1BQ9NQG5 326 aaKnown RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP1.51□□□□□ -2.17
XRN1-214ENST00000498077 CALCOCO1Q9P1Z2 691 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 NRBP1Q9UHY1 535 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 FOXD3Q9UJU5 478 aaPredicted RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 VPS28Q9UK41 221 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 CHIC2Q9UKJ5 165 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 KCNH3Q9ULD8 1083 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 NOVA2Q9UNW9 492 aaKnown RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 TNNQ9UQP3 1299 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 SF3B6Q9Y3B4 125 aaKnown RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 C2CD2Q9Y426 696 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 USP24Q9UPU5 2620 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 NUPR2A6NF83 97 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 TARM1B6A8C7 271 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 OPLAHO14841 1288 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 SIGLEC6O43699 453 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 PSIP1O75475 530 aaKnown RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 KCNK5O95279 499 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 WISP1O95388 367 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 MT-CO1P00395 513 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 PNMA6AP0CW24 399 aaPredicted RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 CD37P11049 281 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 ITGA4P13612 1032 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 EEF2P13639 858 aaKnown RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 SYN1P17600 705 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 OR4D2P58180 307 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 IL2P60568 153 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 CNTN2Q02246 1040 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 UBAP2LQ14157 1087 aaKnown RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 NEDD8Q15843 81 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 LRRFIP1Q32MZ4 808 aaKnown RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 PIGGQ5H8A4 983 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 RGMBQ6NW40 437 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 CCDC174Q6PII3 467 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 FIP1L1Q6UN15 594 aaKnown RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 HHIPL2Q6UWX4 724 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 PRR23CQ6ZRP0 262 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 KRT74Q7RTS7 529 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 CCDC25Q86WR0 208 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 NAGSQ8N159 534 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 AVL9Q8NBF6 648 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 CCNYQ8ND76 341 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 SRFBP1Q8NEF9 429 aaKnown RBP1.51□□□□□ -2.17
XRN1-214ENST00000498077 TRPV3Q8NET8 790 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 OR5C1Q8NGR4 320 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 PLD4Q96BZ4 506 aa1.51□□□□□ -2.17
XRN1-214ENST00000498077 ZNF653Q96CK0 615 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms