RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, human

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBX3-208	ENST00000497498	FHL3	Q13643	280 aa		4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	ACOX1	Q15067	660 aa		4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	NFE2	Q16621	373 aa	Predicted RBP	4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	LVRN	Q6Q4G3	990 aa		4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	RAVER1	Q8IY67	606 aa	Known RBP	4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	TCEAL8	Q8IYN2	117 aa		4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	MAGEB6	Q8N7X4	407 aa		4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	ACRBP	Q8NEB7	543 aa		4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	PRR11	Q96HE9	360 aa	Predicted RBP	4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	FCRL5	Q96RD9	977 aa		4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	TMEM8A	Q9HCN3	771 aa		4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	ITGB1BP2	Q9UKP3	347 aa		4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	NOB1	Q9ULX3	412 aa	Known RBP	4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	HPSE	Q9Y251	543 aa		4.11	□□□□□ -1.75
CBX3-208	ENST00000497498	IGLV5-39	A0A0G2JS06	123 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	GOLIM4	O00461	696 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	TLX3	O43711	291 aa	Predicted RBP	4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	USP12	O75317	370 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	WDR47	O94967	919 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	MAP4K4	O95819	1239 aa	Predicted RBP	4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	MT-ND5	P03915	603 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	HOXA7	P31268	230 aa	Predicted RBP	4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	ARHGAP29	Q52LW3	1261 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	ODR4	Q5SWX8	454 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	DAB2IP	Q5VWQ8	1189 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	ZNF793	Q6ZN11	406 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	FAM57B	Q71RH2	274 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	CHST15	Q7LFX5	561 aa	Predicted RBP	4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	SRGAP1	Q7Z6B7	1085 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	TFAP2D	Q7Z6R9	452 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	SDR16C5	Q8N3Y7	309 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	SPATA3	Q8NHX4	192 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	SUN3	Q8TAQ9	357 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	TRMT61A	Q96FX7	289 aa	Known RBP	4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	GATA5	Q9BWX5	397 aa	Predicted RBP	4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	HIPK2	Q9H2X6	1198 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	SAP30L	Q9HAJ7	183 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	MLXIP	Q9HAP2	919 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	ARL8B	Q9NVJ2	186 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	TMEM45A	Q9NWC5	275 aa		4.1	□□□□□ -1.75
CBX3-208	ENST00000497498	ZNF814	B7Z6K7	855 aa		4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	FOXN3	O00409	490 aa	Predicted RBP	4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	SCGB1D2	O95969	90 aa		4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	ZBED1	O96006	694 aa		4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	RPS6KB1	P23443	525 aa		4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	AASDH	Q4L235	1098 aa	Predicted RBP	4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	UBAP2	Q5T6F2	1119 aa	Known RBP	4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	ZNF549	Q6P9A3	640 aa		4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	DARS2	Q6PI48	645 aa	Known RBP	4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	RBM44	Q6ZP01	1051 aa	Known RBP	4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	FSTL5	Q8N475	847 aa	Predicted RBP	4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	FAM156A	Q8NDB6	213 aa		4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	SCNM1	Q9BWG6	230 aa		4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	ZNF212	Q9UDV6	495 aa		4.09	□□□□□ -1.75
CBX3-208	ENST00000497498	SLC22A23	A1A5C7	686 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	GTPBP1	O00178	669 aa	Known RBP	4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	TPP1	O14773	563 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	RPL17	P18621	184 aa	Known RBP	4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	IDUA	P35475	653 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	IL6ST	P40189	918 aa	Predicted RBP	4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	DGKQ	P52824	942 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	SLC12A2	P55011	1212 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	FAM193A	P78312	1265 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	RAE1	P78406	368 aa	Known RBP	4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	KCNJ12	Q14500	433 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	MANEA	Q5SRI9	462 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	CCDC149	Q6ZUS6	474 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	SMRP1	Q8NCR6	262 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	PIGK	Q92643	395 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	SNX22	Q96L94	193 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	NLRP4	Q96MN2	994 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	STRBP	Q96SI9	672 aa	Known RBP	4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	RNF26	Q9BY78	433 aa	Predicted RBP	4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	ABHD10	Q9NUJ1	306 aa		4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	DDX20	Q9UHI6	824 aa	Known RBP	4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	SIRT4	Q9Y6E7	314 aa	Predicted RBP	4.08	□□□□□ -1.76
CBX3-208	ENST00000497498	TRBV5-3	A0A0A0MS03	114 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	MGEA5	O60502	916 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	CBFA2T3	O75081	653 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	EPN2	O95208	641 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	PEX2	P28328	305 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	CDKN2A	P42771	156 aa	Known RBP	4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	PPP2R5A	Q15172	486 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	KIAA0753	Q2KHM9	967 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	P3H2	Q8IVL5	708 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	SLC25A28	Q96A46	364 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	MSI2	Q96DH6	328 aa	Known RBP	4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	THOC3	Q96J01	351 aa	Known RBP	4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	WDR24	Q96S15	920 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	TUBB6	Q9BUF5	446 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	SLC25A32	Q9H2D1	315 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	MSRB1	Q9NZV6	116 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	PCDHA12	Q9UN75	941 aa		4.07	□□□□□ -1.76
CBX3-208	ENST00000497498	HEMK1	Q9Y5R4	338 aa	Predicted RBP	4.07	□□□□□ -1.76
CBX3-208	ENST00000497498		F8W8V4	182 aa		4.06	□□□□□ -1.76
CBX3-208	ENST00000497498	CTIF	O43310	598 aa	Known RBP	4.06	□□□□□ -1.76
CBX3-208	ENST00000497498	DUSP1	P28562	367 aa		4.06	□□□□□ -1.76
CBX3-208	ENST00000497498	HOXD12	P35452	270 aa		4.06	□□□□□ -1.76
CBX3-208	ENST00000497498	PBX1	P40424	430 aa		4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms