RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 EML3Q32P44 896 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 WDR72Q3MJ13 1102 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 EMC10Q5UCC4 262 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 CAPRIN2Q6IMN6 1127 aaKnown RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 SPOPLQ6IQ16 392 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 SCARA5Q6ZMJ2 495 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 TMEM139Q8IV31 216 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 C12orf56Q8IXR9 622 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 ELOA2Q8IYF1 753 aaPredicted RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 EHBP1Q8NDI1 1231 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 OR8K1Q8NGG5 319 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 MYCBPAPQ8TBZ2 947 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 SPATA18Q8TC71 538 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 SH3RF2Q8TEC5 729 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 ZFAND2BQ8WV99 257 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 MRPS31Q92665 395 aaKnown RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 CCDC114Q96M63 670 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 CD248Q9HCU0 757 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 SLC40A1Q9NP59 571 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 DLL3Q9NYJ7 618 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 NCDNQ9UBB6 729 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 MAGEC2Q9UBF1 373 aaPredicted RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 NXF1Q9UBU9 619 aaKnown RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 HOOK1Q9UJC3 728 aaKnown RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 CORO1CQ9ULV4 474 aaPredicted RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 HPSEQ9Y251 543 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.6□□□□□ -1.03
HDAC6-234ENST00000493923 CACNA1BQ00975 2339 aa8.6□□□□□ -1.03
HDAC6-234ENST00000493923 GOLGA6L10A0A0M3HER8 536 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 PVALEFA0A1B0GWK0 134 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 ZNF840PA6NDX5 716 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 ANKRD65E5RJM6 399 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 TRDMT1O14717 391 aaKnown RBP8.59□□□□□ -1.03
HDAC6-234ENST00000493923 PHACTR2O75167 634 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 TACC1O75410 805 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 BEST1O76090 585 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 PAPSS2O95340 614 aaPredicted RBP8.59□□□□□ -1.03
HDAC6-234ENST00000493923 CKMP06732 381 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 HNRNPLP14866 589 aaKnown RBP eCLIP8.59□□□□□ -1.03
HDAC6-234ENST00000493923 DDX6P26196 483 aaKnown RBP eCLIP8.59□□□□□ -1.03
HDAC6-234ENST00000493923 GRIK1P39086 918 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 NDUFA8P51970 172 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 NAP1L1P55209 391 aaKnown RBP8.59□□□□□ -1.03
HDAC6-234ENST00000493923 SH3BGRP55822 239 aaPredicted RBP8.59□□□□□ -1.03
HDAC6-234ENST00000493923 AMPD3Q01432 767 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 ROR2Q01974 943 aaKnown RBP8.59□□□□□ -1.03
HDAC6-234ENST00000493923 SPEM2Q0P670 501 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 LRRC32Q14392 662 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 SURF1Q15526 300 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 CCDC6Q16204 474 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 DGKKQ5KSL6 1271 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 SPECC1LQ69YQ0 1117 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 SLC30A9Q6PML9 568 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 PRR23BQ6ZRT6 265 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 STXBP4Q6ZWJ1 553 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 DPH6Q7L8W6 267 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 FMR1NBQ8N0W7 255 aaPredicted RBP8.59□□□□□ -1.03
HDAC6-234ENST00000493923 TEX9Q8N6V9 391 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 ZMIZ2Q8NF64 920 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 OR6B3Q8NGW1 331 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 SCAMP5Q8TAC9 235 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 PARD3BQ8TEW8 1205 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 FUBP3Q96I24 572 aaKnown RBP eCLIP8.59□□□□□ -1.03
HDAC6-234ENST00000493923 SPATA17Q96L03 361 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 SPAG5Q96R06 1193 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 KCNK16Q96T55 309 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 TTLL2Q9BWV7 592 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 LRRC27Q9C0I9 530 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 EPN3Q9H201 632 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 SMOC1Q9H4F8 434 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 ECT2Q9H8V3 914 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 MAGEF1Q9HAY2 307 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 KIAA1586Q9HCI6 787 aa8.59□□□□□ -1.03
HDAC6-234ENST00000493923 DUS2Q9NX74 493 aaKnown RBP8.59□□□□□ -1.03
HDAC6-234ENST00000493923 TRAV19A0A0A6YYK7 116 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 MYO1FO00160 1098 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 LEFTY2O00292 366 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 TNFRSF10BO14763 440 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 GDF9O60383 454 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 EXOC3O60645 756 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 HSF2BPO75031 334 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 DNAJC8O75937 253 aaPredicted RBP8.58□□□□□ -1.04
HDAC6-234ENST00000493923 RTN3O95197 1032 aaPredicted RBP8.58□□□□□ -1.04
HDAC6-234ENST00000493923 STAU1O95793 577 aaKnown RBP8.58□□□□□ -1.04
HDAC6-234ENST00000493923 USP17L7P0C7H9 530 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 CCDC130P13994 396 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 HDCP19113 662 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 OPRD1P41143 372 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 SLC6A11P48066 632 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 ATXN1P54253 815 aaKnown RBP8.58□□□□□ -1.04
HDAC6-234ENST00000493923 CLDN10P78369 228 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 IFRD2Q12894 506 aaPredicted RBP8.58□□□□□ -1.04
HDAC6-234ENST00000493923 TAF10Q12962 218 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 DYNC1I2Q13409 638 aaKnown RBP8.58□□□□□ -1.04
HDAC6-234ENST00000493923 RIPK1Q13546 671 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 SIM2Q14190 667 aaPredicted RBP8.58□□□□□ -1.04
HDAC6-234ENST00000493923 NCAPHQ15003 741 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 CYB5D1Q6P9G0 228 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 VSTM1Q6UX27 236 aa8.58□□□□□ -1.04
HDAC6-234ENST00000493923 TMEM92Q6UXU6 159 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms