RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 GUF1Q8N442 669 aaKnown RBP12.17□□□□□ -0.46
COL6A3-213ENST00000493475 C12orf29Q8N999 325 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 PLEKHO2Q8TD55 490 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 HEXIM2Q96MH2 286 aaKnown RBP12.17□□□□□ -0.46
COL6A3-213ENST00000493475 TSG101Q99816 390 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 GABRG3Q99928 467 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 DUSP16Q9BY84 665 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 ADAM33Q9BZ11 813 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 GTPBP4Q9BZE4 634 aaKnown RBP12.17□□□□□ -0.46
COL6A3-213ENST00000493475 ZDHHC5Q9C0B5 715 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 SDCBP2Q9H190 292 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 MMRN2Q9H8L6 949 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 OLA1Q9NTK5 396 aaKnown RBP12.17□□□□□ -0.46
COL6A3-213ENST00000493475 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.17□□□□□ -0.46
COL6A3-213ENST00000493475 RMND1Q9NWS8 449 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 PCDHB9Q9Y5E1 797 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 A0A1W2PQH9 124 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 MEI4A8MW99 385 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 CETN3O15182 167 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 TIMM44O43615 452 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 CILPO75339 1184 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 HNRNPLP14866 589 aaKnown RBP eCLIP12.16□□□□□ -0.46
COL6A3-213ENST00000493475 ITPKAP23677 461 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 OXTRP30559 389 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 WASP42768 502 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 MXI1P50539 228 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 EIF4HQ15056 248 aaKnown RBP12.16□□□□□ -0.46
COL6A3-213ENST00000493475 PEAR1Q5VY43 1037 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-213ENST00000493475 EGFLAMQ63HQ2 1017 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 SPOPLQ6IQ16 392 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 ANKS1BQ7Z6G8 1248 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 FBXL13Q8NEE6 735 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 DEFB124Q8NES8 71 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 ZMIZ2Q8NF64 920 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 HSPA12BQ96MM6 686 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 UBXN6Q9BZV1 441 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 HESX1Q9UBX0 185 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 HMGXB4Q9UGU5 601 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 HOOK1Q9UJC3 728 aaKnown RBP12.16□□□□□ -0.46
COL6A3-213ENST00000493475 RASAL2Q9UJF2 1139 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 CYP8B1Q9UNU6 501 aa12.16□□□□□ -0.46
COL6A3-213ENST00000493475 ATXN2Q99700 1313 aaKnown RBP12.15□□□□□ -0.46
COL6A3-213ENST00000493475 USP24Q9UPU5 2620 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 IGHV1OR15-9A0A0B4J2B8 117 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 GOLGA6L4A6NEF3 574 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 ARHGAP33O14559 1287 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 BEST1O76090 585 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 TBX18O95935 607 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 NDUFV2P19404 249 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 CD6P30203 668 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 HARS2P49590 506 aaKnown RBP12.15□□□□□ -0.46
COL6A3-213ENST00000493475 KIF11P52732 1056 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 SIM1P81133 766 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-213ENST00000493475 ZNF423Q2M1K9 1284 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 EDRF1Q3B7T1 1238 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 PLEKHG6Q3KR16 790 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 METTL3Q86U44 580 aaKnown RBP12.15□□□□□ -0.46
COL6A3-213ENST00000493475 SFTPA1Q8IWL2 248 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 ZNF557Q8N988 423 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-213ENST00000493475 TRIML1Q8N9V2 468 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 SPRYD3Q8NCJ5 442 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 RNF139Q8WU17 664 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 PRCCQ92733 491 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-213ENST00000493475 GOLGA1Q92805 767 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 BHMTQ93088 406 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 IPO9Q96P70 1041 aaKnown RBP12.15□□□□□ -0.46
COL6A3-213ENST00000493475 SLC2A11Q9BYW1 496 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 ZDHHC4Q9NPG8 344 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 MBD1Q9UIS9 605 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-213ENST00000493475 SLC27A6Q9Y2P4 619 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 NFE2L3Q9Y4A8 694 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 KIAA1549LQ6ZVL6 1849 aa12.15□□□□□ -0.46
COL6A3-213ENST00000493475 EML5Q05BV3 1969 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 THADAQ6YHU6 1953 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 A0A1W2PQF6 199 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 GIPC1O14908 333 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 STC2O76061 302 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 TRIM49P0CI25 452 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 TRIM49CP0CI26 452 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 CORO1AP31146 461 aaKnown RBP12.14□□□□□ -0.47
COL6A3-213ENST00000493475 MESP2Q0VG99 397 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 CETN1Q12798 172 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 EFEMP1Q12805 493 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 SEMA3BQ13214 749 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 ZNF394Q53GI3 561 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 IL27RAQ6UWB1 636 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 CCDC117Q8IWD4 279 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-213ENST00000493475 MINDY1Q8N5J2 469 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 ENGASEQ8NFI3 743 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 CADM4Q8NFZ8 388 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 TAS1R2Q8TE23 839 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 DDI1Q8WTU0 396 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 PLD4Q96BZ4 506 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 TMEM176AQ96HP8 235 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 MRGPRX1Q96LB2 322 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 PRDM16Q9HAZ2 1276 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 LRRC4Q9HBW1 653 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 CISHQ9NSE2 258 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 TMEM74BQ9NUR3 256 aa12.14□□□□□ -0.47
COL6A3-213ENST00000493475 RAB20Q9NX57 234 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms