RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 SIRT3Q9NTG7 399 aaPredicted RBP4.4□□□□□ -1.71
BRCA1-220ENST00000492859 GJB4Q9NTQ9 266 aa4.4□□□□□ -1.71
BRCA1-220ENST00000492859 WWOXQ9NZC7 414 aa4.4□□□□□ -1.71
BRCA1-220ENST00000492859 SELENONQ9NZV5 590 aa4.4□□□□□ -1.71
BRCA1-220ENST00000492859 CFAP97Q9P2B7 532 aa4.4□□□□□ -1.71
BRCA1-220ENST00000492859 PPM1HQ9ULR3 514 aa4.4□□□□□ -1.71
BRCA1-220ENST00000492859 TTC7AQ9ULT0 858 aaPredicted RBP4.4□□□□□ -1.71
BRCA1-220ENST00000492859 AGAP1Q9UPQ3 857 aa4.4□□□□□ -1.71
BRCA1-220ENST00000492859 STXBP5LQ9Y2K9 1186 aa4.4□□□□□ -1.71
BRCA1-220ENST00000492859 PCDHB11Q9Y5F2 797 aa4.4□□□□□ -1.71
BRCA1-220ENST00000492859 PSAT1Q9Y617 370 aa4.4□□□□□ -1.71
BRCA1-220ENST00000492859 FPGT-TNNI3KV9GXZ4 949 aa4.4□□□□□ -1.71
BRCA1-220ENST00000492859 LMTK3Q96Q04 1460 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 LOC100506127A0A0U1RQW1 187 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 A0A1W2PPW3 197 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 ARHGEF37A1IGU5 675 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 DNM1LO00429 736 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 DNALI1O14645 258 aaPredicted RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 CYP27B1O15528 508 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 GCATO75600 419 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 TMCC1O94876 653 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 ZIC2O95409 532 aaPredicted RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 PTBP3O95758 552 aaKnown RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 OTCP00480 354 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 SERPINF2P08697 491 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 STAG3L3P0CL85 134 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 NCF1P14598 390 aaPredicted RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 C5AR1P21730 350 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 ITGA6P23229 1130 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 FSHRP23945 695 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 ABCD3P28288 659 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 LSP1P33241 339 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 TRHRP34981 398 aaPredicted RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 HSPA13P48723 471 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 GDI2P50395 445 aaKnown RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 GATMP50440 423 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 GDF10P55107 478 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 HNRNPH2P55795 449 aaKnown RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 FCGRTP55899 365 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 ERVFC1P60507 584 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 UBE2HP62256 183 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 FOXO4P98177 505 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 OCRLQ01968 901 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 PRKCEQ02156 737 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 GFPT1Q06210 699 aaPredicted RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 FSTL1Q12841 308 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 IL24Q13007 206 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 GPS1Q13098 491 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 MAMLD1Q13495 774 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 DGKZQ13574 1117 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 GAS6Q14393 721 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 NONOQ15233 471 aaKnown RBP eCLIP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 TBCCQ15814 346 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 KCNA10Q16322 511 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 DGKDQ16760 1214 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 MCMDC2Q4G0Z9 681 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 RTP2Q5QGT7 225 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 FAXCQ5TGI0 409 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 VWA5B1Q5TIE3 1220 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 GARNL3Q5VVW2 1013 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 TANGO2Q6ICL3 276 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 KLHL24Q6TFL4 600 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 PET117Q6UWS5 81 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 TREML4Q6UXN2 200 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 ZNF852Q6ZMS4 543 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 AKAP14Q86UN6 197 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 TPRA1Q86W33 373 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 KIF18BQ86Y91 864 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 KIAA2013Q8IYS2 634 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 C17orf53Q8N3J3 647 aaPredicted RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 CCDC63Q8NA47 563 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 TTC16Q8NEE8 873 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 SMARCC2Q8TAQ2 1214 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 GATA6Q92908 595 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 MUL1Q969V5 352 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 KTI12Q96EK9 354 aaPredicted RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 ALG14Q96F25 216 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 APIPQ96GX9 242 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 ZNF560Q96MR9 790 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 RPRD1AQ96P16 312 aaPredicted RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 USP28Q96RU2 1077 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 AIFM2Q9BRQ8 373 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 CARD6Q9BX69 1037 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 EIF2AQ9BY44 585 aaKnown RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 ZNF341Q9BYN7 854 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 GPR61Q9BZJ8 451 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 PITHD1Q9GZP4 211 aaPredicted RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 USP44Q9H0E7 712 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 HIPK3Q9H422 1215 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 TMEM184CQ9NVA4 438 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 THG1LQ9NWX6 298 aaKnown RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 PAQR5Q9NXK6 330 aaPredicted RBP4.39□□□□□ -1.71
BRCA1-220ENST00000492859 ITGA11Q9UKX5 1188 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 RNF112Q9ULX5 631 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 CAPN11Q9UMQ6 739 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 BCS1LQ9Y276 419 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 POMT1Q9Y6A1 747 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 SPATA31A3Q5VYP0 1347 aa4.39□□□□□ -1.71
BRCA1-220ENST00000492859 ROCK2O75116 1388 aaKnown RBP4.38□□□□□ -1.71
BRCA1-220ENST00000492859 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms