RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ERBB2P04626 1255 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 CHRM5P08912 532 aaPredicted RBP2.57□□□□□ -2
HMGB1-208ENST00000490788 CYP2D6P10635 497 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 HGFP14210 728 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 BTF3P20290 206 aaKnown RBP2.57□□□□□ -2
HMGB1-208ENST00000490788 PCSK6P29122 969 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 COPB1P53618 953 aaKnown RBP2.57□□□□□ -2
HMGB1-208ENST00000490788 DAG1Q14118 895 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 ZNF750Q32MQ0 723 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 CCDC181Q5TID7 509 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 ZKSCAN2Q63HK3 967 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 PLAG1Q6DJT9 500 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 MIS18BP1Q6P0N0 1132 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 TMEM65Q6PI78 240 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 KIRREL2Q6UWL6 708 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 DPY19L3Q6ZPD9 716 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 PTCHD4Q6ZW05 846 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 BEND5Q7L4P6 421 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 C11orf96Q7Z7L8 435 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 CNGA4Q8IV77 575 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 P3H2Q8IVL5 708 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 KRT78Q8N1N4 520 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 GALNT4Q8N4A0 578 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 C11orf44Q8N8P7 122 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 LRRC46Q96FV0 321 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 ASB2Q96Q27 587 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 SNX18Q96RF0 628 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 PRR25Q96S07 402 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 MMS19Q96T76 1030 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 MAGEB5Q9BZ81 275 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 SEMA4CQ9C0C4 833 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 TRIM36Q9NQ86 728 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 TMOD4Q9NZQ9 345 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 DNAJB11Q9UBS4 358 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 MAFFQ9ULX9 164 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 HPSEQ9Y251 543 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 CEP83Q9Y592 693 aa2.57□□□□□ -2
HMGB1-208ENST00000490788 COL11A2P13942 1736 aaPredicted RBP2.56□□□□□ -2
HMGB1-208ENST00000490788 NUP188Q5SRE5 1749 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 POM121BA6NF01 834 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 PRRT4C9JH25 899 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 BTBD19C9JJ37 291 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 TMEM232C9JQI7 657 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 KPNA5O15131 536 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 PRC1O43663 620 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 COQ9O75208 318 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 FGAP02671 866 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 LMO1P25800 156 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 RBL1P28749 1068 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 PLCD1P51178 756 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 ALDH5A1P51649 535 aaPredicted RBP2.56□□□□□ -2
HMGB1-208ENST00000490788 TIRAPP58753 221 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 TXNL4AP83876 142 aaKnown RBP2.56□□□□□ -2
HMGB1-208ENST00000490788 PICALMQ13492 652 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 KCNAB1Q14722 419 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 NPY5RQ15761 445 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 CYP1B1Q16678 543 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 PROSER3Q2NL68 480 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 CC2D1BQ5T0F9 858 aaKnown RBP2.56□□□□□ -2
HMGB1-208ENST00000490788 RRAGBQ5VZM2 374 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 VSTM1Q6UX27 236 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 CLEC9AQ6UXN8 241 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 LIX1LQ8IVB5 337 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 ATP11CQ8NB49 1132 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 ADAMTS18Q8TE60 1221 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 DDB2Q92466 427 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 LENG8Q96PV6 779 aaPredicted RBP2.56□□□□□ -2
HMGB1-208ENST00000490788 MACROD1Q9BQ69 325 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 SARGQ9BW04 601 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 CINPQ9BW66 212 aaPredicted RBP2.56□□□□□ -2
HMGB1-208ENST00000490788 SLC25A32Q9H2D1 315 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 USP29Q9HBJ7 922 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 DDX21Q9NR30 783 aaKnown RBP eCLIP2.56□□□□□ -2
HMGB1-208ENST00000490788 FLRT1Q9NZU1 646 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 FRMD4BQ9Y2L6 1034 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 AOX1Q06278 1338 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 CLSPNQ9HAW4 1339 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 ADCY9O60503 1353 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 MAP3K5Q99683 1374 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 NCOA2Q15596 1464 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 ARHGAP5Q13017 1502 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 MROH1Q8NDA8 1641 aa2.56□□□□□ -2
HMGB1-208ENST00000490788 TNS1Q9HBL0 1735 aaKnown RBP2.56□□□□□ -2
HMGB1-208ENST00000490788 PPP6CO00743 305 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 ZNF213O14771 459 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 APOL1O14791 398 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 DSCR3O14972 297 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 PMM2O15305 246 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 ABCC5O15440 1437 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 PLIN1O60240 522 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 MT-CO3P00414 261 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 TUBB4AP04350 444 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 MYL1P05976 194 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 SLC3A2P08195 630 aaKnown RBP2.55□□□□□ -2
HMGB1-208ENST00000490788 TMEM225BP0DP42 221 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 MYL4P12829 197 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 TRIM27P14373 513 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 IL1R1P14778 569 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 PZPP20742 1482 aa2.55□□□□□ -2
HMGB1-208ENST00000490788 KELP23276 732 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms