RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 HHIPQ96QV1 700 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 CDK5RAP1Q96SZ6 601 aaKnown RBP18.96■□□□□ 0.63
COL9A3-214ENST00000490398 PLCB1Q9NQ66 1216 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 ST7Q9NRC1 585 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 ABCC13Q9NSE7 274 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 MARK1Q9P0L2 795 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 ZNF292O60281 2723 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 FANCMQ8IYD8 2048 aa18.96■□□□□ 0.63
COL9A3-214ENST00000490398 RIF1Q5UIP0 2472 aaKnown RBP18.95■□□□□ 0.62
COL9A3-214ENST00000490398 E5RJQ4 531 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 EPHB6O15197 1021 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 HRO43593 1189 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 LTFP02788 710 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 TYRP14679 529 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 EIF2DP41214 584 aaKnown RBP18.95■□□□□ 0.62
COL9A3-214ENST00000490398 PDCLQ13371 301 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 DRAP1Q14919 205 aaPredicted RBP18.95■□□□□ 0.62
COL9A3-214ENST00000490398 TAF5Q15542 800 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 TRIP4Q15650 581 aaPredicted RBP18.95■□□□□ 0.62
COL9A3-214ENST00000490398 DCLK2Q8N568 766 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 CCDC33Q8N5R6 958 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 RNF139Q8WU17 664 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 FAM81BQ96LP2 452 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 BBS2Q9BXC9 721 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 GANQ9H2C0 597 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 STRIP2Q9ULQ0 834 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 CLEC4EQ9ULY5 219 aa18.95■□□□□ 0.62
COL9A3-214ENST00000490398 A0A0A0MRY4 1105 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 MED7O43513 233 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 CISD3P0C7P0 127 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 TIE1P35590 1138 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 KIR2DL1P43626 348 aaPredicted RBP18.94■□□□□ 0.62
COL9A3-214ENST00000490398 COPB1P53618 953 aaKnown RBP18.94■□□□□ 0.62
COL9A3-214ENST00000490398 MYL5Q02045 173 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 RAPGEF1Q13905 1077 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 DMC1Q14565 340 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 LPAL2Q16609 132 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 FYB2Q5VWT5 728 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 MSANTD2Q6P1R3 559 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 APTXQ7Z2E3 356 aaKnown RBP18.94■□□□□ 0.62
COL9A3-214ENST00000490398 TMEM110Q86TL2 294 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 STK32AQ8WU08 396 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 EXOC4Q96A65 974 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 CPXM1Q96SM3 734 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 FAM126AQ9BYI3 521 aaPredicted RBP18.94■□□□□ 0.62
COL9A3-214ENST00000490398 DNAJC17Q9NVM6 304 aaKnown RBP18.94■□□□□ 0.62
COL9A3-214ENST00000490398 NAALADL1Q9UQQ1 740 aa18.94■□□□□ 0.62
COL9A3-214ENST00000490398 CACNG3O60359 315 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 ATG13O75143 517 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 FBXO21O94952 628 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 APODP05090 189 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 UCHL3P15374 230 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 ZNF18P17022 549 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 GRIA2P42262 883 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 PPP2R5DQ14738 602 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 MEA1Q16626 185 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 ANO6Q4KMQ2 910 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 SYPL2Q5VXT5 272 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 SYT13Q7L8C5 426 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 LONP2Q86WA8 852 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 ALLCQ8N6M5 410 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 AOPEPQ8N6M6 819 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 C1orf131Q8NDD1 294 aaKnown RBP18.93■□□□□ 0.62
COL9A3-214ENST00000490398 ADAM32Q8TC27 787 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 PLD4Q96BZ4 506 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 EPC1Q9H2F5 836 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 SEMA4AQ9H3S1 761 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 OLA1Q9NTK5 396 aaKnown RBP18.93■□□□□ 0.62
COL9A3-214ENST00000490398 DEC1Q9P2X7 70 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 LIMA1Q9UHB6 759 aaKnown RBP18.93■□□□□ 0.62
COL9A3-214ENST00000490398 PCDHGC3Q9UN70 934 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 SLC8A2Q9UPR5 921 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 KIAA1549LQ6ZVL6 1849 aa18.93■□□□□ 0.62
COL9A3-214ENST00000490398 GVINP1Q7Z2Y8 2422 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 TBC1D3BA6NDS4 549 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.92■□□□□ 0.62
COL9A3-214ENST00000490398 PRRT4C9JH25 899 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 SGK1O00141 431 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 GFRA2O00451 464 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 TSPAN3O60637 253 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 PENKP01210 267 aaPredicted RBP18.92■□□□□ 0.62
COL9A3-214ENST00000490398 ATP1A3P13637 1013 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 NRLP54845 237 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 PITX1P78337 314 aaPredicted RBP18.92■□□□□ 0.62
COL9A3-214ENST00000490398 PTK2Q05397 1052 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 GRAMD4Q6IC98 578 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 TMEM92Q6UXU6 159 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 FAM217AQ8IXS0 508 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 TERB1Q8NA31 727 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 IL17RCQ8NAC3 791 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 TXNDC5Q8NBS9 432 aaKnown RBP18.92■□□□□ 0.62
COL9A3-214ENST00000490398 DQX1Q8TE96 717 aaKnown RBP18.92■□□□□ 0.62
COL9A3-214ENST00000490398 DCLK3Q9C098 648 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 WDR35Q9P2L0 1181 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 SMG5Q9UPR3 1016 aaKnown RBP18.92■□□□□ 0.62
COL9A3-214ENST00000490398 SIK3Q9Y2K2 1263 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 HBS1LQ9Y450 684 aaKnown RBP18.92■□□□□ 0.62
COL9A3-214ENST00000490398 EP300Q09472 2414 aaPredicted RBP18.92■□□□□ 0.62
COL9A3-214ENST00000490398 DMXL1Q9Y485 3027 aa18.92■□□□□ 0.62
COL9A3-214ENST00000490398 GOLGA6L7A0A1B0GV03 622 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms