RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 PDPRQ8NCN5 879 aa3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 SLC17A8Q8NDX2 589 aa3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 TOR1AIP2Q8NFQ8 470 aa3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 TDRD7Q8NHU6 1098 aaKnown RBP3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 ATRIPQ8WXE1 791 aa3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 FBXL20Q96IG2 436 aa3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 P2RX7Q99572 595 aaKnown RBP3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 VRK1Q99986 396 aaPredicted RBP3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 COLEC11Q9BWP8 271 aa3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 ATP8A2Q9NTI2 1148 aa3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 INTS13Q9NVM9 706 aa3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 SLC17A6Q9P2U8 582 aa3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 ORC3Q9UBD5 711 aaPredicted RBP3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 OGDHLQ9ULD0 1010 aa3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 PCDHA6Q9UN73 950 aa3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 PCDHA3Q9Y5H8 950 aa3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 SNX5Q9Y5X3 404 aa3.57□□□□□ -1.84
DEPDC1-204ENST00000489862 CCDC195A0A1B0GUA6 201 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 SMTNL1A8MU46 457 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 H3BUI4 141 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 PHGDHO43175 533 aaKnown RBP3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 IRAK2O43187 625 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 SLC3A2P08195 630 aaKnown RBP3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 ELFN1P0C7U0 828 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 FAM200BP0CF97 657 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 HNRNPMP52272 730 aaKnown RBP eCLIP3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 HK3P52790 923 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 CASP6P55212 293 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 NHLH1Q02575 133 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 BECN1Q14457 450 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 RAB39AQ14964 217 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 KHDC1Q4VXA5 237 aaKnown RBP3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 ZNF449Q6P9G9 518 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 SLC22A25Q6T423 547 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 DNAJB7Q7Z6W7 309 aaPredicted RBP3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 PEG10Q86TG7 708 aaKnown RBP3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 CHD1LQ86WJ1 897 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 PPP1R3BQ86XI6 285 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 C2CD5Q86YS7 1000 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 GALNT13Q8IUC8 556 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 ADGRG5Q8IZF4 528 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 ATP11CQ8NB49 1132 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 CSGALNACT1Q8TDX6 532 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 CREB3L4Q8TEY5 395 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 MRGPRX1Q96LB2 322 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 ZNF778Q96MU6 729 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 PYM1Q9BRP8 204 aaKnown RBP3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 PAIP1Q9H074 479 aaKnown RBP3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 IRAK4Q9NWZ3 460 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 PCDHGB5Q9Y5G0 923 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 RIMBP3CA6NJZ7 1639 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 RIMBP3BA6NNM3 1639 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 RIMBP3Q9UFD9 1639 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 ARHGEF11O15085 1522 aa3.56□□□□□ -1.84
DEPDC1-204ENST00000489862 E9PLN8 166 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 PIP5K1BO14986 540 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 MPPED1O15442 326 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 PROM1O43490 865 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 ASNA1O43681 348 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 RTN3O95197 1032 aaPredicted RBP3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 PGM3O95394 542 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 MLYCDO95822 493 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 PTMAP06454 111 aaKnown RBP3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 CHRM2P08172 466 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 CLTBP09497 229 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 PPP3CBP16298 524 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 MUTP22033 750 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 POLD2P49005 469 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 CTCFP49711 727 aaPredicted RBP3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 CCT4P50991 539 aaKnown RBP3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 ANXA11P50995 505 aaKnown RBP3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 PTK2BQ14289 1009 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 RAB30Q15771 203 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 ASIC2Q16515 512 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 PREPLQ4J6C6 727 aaPredicted RBP3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 CCDC157Q569K6 752 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 MFSD4BQ5TF39 518 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 TANGO2Q6ICL3 276 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 RPUSD3Q6P087 351 aaKnown RBP3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 SLC30A10Q6XR72 485 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 DSTYKQ6XUX3 929 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 USP49Q70CQ1 688 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 HSCBQ8IWL3 235 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 CARNMT1Q8N4J0 409 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 APPL2Q8NEU8 664 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 MYCBPAPQ8TBZ2 947 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 OTUD7AQ8TE49 926 aaPredicted RBP3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 ATP6V1E2Q96A05 226 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 MSLNLQ96KJ4 702 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 TSPAN18Q96SJ8 248 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 VKORC1Q9BQB6 163 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 USP44Q9H0E7 712 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 PREBQ9HCU5 417 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 CALCOCO1Q9P1Z2 691 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 ARPP21Q9UBL0 812 aaPredicted RBP3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 PCDHGB4Q9UN71 923 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 CNPY2Q9Y2B0 182 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 NEU2Q9Y3R4 380 aa3.55□□□□□ -1.84
DEPDC1-204ENST00000489862 CEP83Q9Y592 693 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms