RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 ADAM10O14672 748 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 DHHO43323 396 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 CAND2O75155 1236 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 HOXD9P28356 352 aaPredicted RBP4.32□□□□□ -1.72
RFC4-213ENST00000489028 THBS4P35443 961 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 YPEL5P62699 121 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 CCDC15Q0P6D6 951 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 ATP1A4Q13733 1029 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 C4orf46Q504U0 113 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 FAM71DQ8N9W8 422 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 CCDC150Q8NCX0 1101 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 NGDNQ8NEJ9 315 aaKnown RBP4.32□□□□□ -1.72
RFC4-213ENST00000489028 ABHD5Q8WTS1 349 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 SCARB1Q8WTV0 552 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 BRI3BPQ8WY22 251 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 KIAA1191Q96A73 305 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 C18orf8Q96DM3 657 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 SNX27Q96L92 541 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.32□□□□□ -1.722e-8■■□□□ 13.1
RFC4-213ENST00000489028 MLXIPLQ9NP71 852 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 TMOD4Q9NZQ9 345 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 PCDHGB2Q9Y5G2 931 aa4.32□□□□□ -1.72
RFC4-213ENST00000489028 RRHO14718 337 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 DSCR3O14972 297 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 CCNT2O60583 730 aaKnown RBP4.31□□□□□ -1.72
RFC4-213ENST00000489028 KRT18P05783 430 aaKnown RBP4.31□□□□□ -1.72
RFC4-213ENST00000489028 NBPF7P0C2Y1 421 aaPredicted RBP4.31□□□□□ -1.72
RFC4-213ENST00000489028 EEF1GP26641 437 aaKnown RBP4.31□□□□□ -1.72
RFC4-213ENST00000489028 WDR5P61964 334 aaKnown RBP4.31□□□□□ -1.72
RFC4-213ENST00000489028 CFHR1Q03591 330 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 KRTAP1-1Q07627 177 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 GAB1Q13480 694 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 KPNB1Q14974 876 aaKnown RBP4.31□□□□□ -1.72
RFC4-213ENST00000489028 MPEG1Q2M385 716 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 CC2D1BQ5T0F9 858 aaKnown RBP4.31□□□□□ -1.72
RFC4-213ENST00000489028 IZUMO3Q5VZ72 239 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 VSTM1Q6UX27 236 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 PIK3AP1Q6ZUJ8 805 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 TFAP2DQ7Z6R9 452 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 GLCCI1Q86VQ1 547 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 HIC2Q96JB3 615 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 FAM118BQ9BPY3 351 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 CINPQ9BW66 212 aaPredicted RBP4.31□□□□□ -1.72
RFC4-213ENST00000489028 VPS16Q9H269 839 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 FSCN3Q9NQT6 498 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 CHST12Q9NRB3 414 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 ABHD10Q9NUJ1 306 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 VPS4AQ9UN37 437 aa4.31□□□□□ -1.72
RFC4-213ENST00000489028 ZSCAN9O15535 394 aaPredicted RBP4.3□□□□□ -1.72
RFC4-213ENST00000489028 MOSPD3O75425 235 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 RNF8O76064 485 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 MYL1P05976 194 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 ALADP13716 330 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 HSPA7P48741 367 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 JAK3P52333 1124 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 DGKQP52824 942 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 AK2P54819 239 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 KRTAP10-11P60412 298 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 BFSP2Q13515 415 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 MAPKAPK3Q16644 382 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 MAP9Q49MG5 647 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 C11orf96Q7Z7L8 435 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 CLASRPQ8N2M8 674 aaKnown RBP4.3□□□□□ -1.72
RFC4-213ENST00000489028 DENND1AQ8TEH3 1009 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 WIPF2Q8TF74 440 aaPredicted RBP4.3□□□□□ -1.72
RFC4-213ENST00000489028 ZNF566Q969W8 418 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 SGCZQ96LD1 299 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 CCDC138Q96M89 665 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 ZNF48Q96MX3 618 aaPredicted RBP4.3□□□□□ -1.72
RFC4-213ENST00000489028 GATA5Q9BWX5 397 aaPredicted RBP4.3□□□□□ -1.72
RFC4-213ENST00000489028 TM2D2Q9BX73 214 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 ADGRE3Q9BY15 652 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 CERS4Q9HA82 394 aa4.3□□□□□ -1.72
RFC4-213ENST00000489028 AGO4Q9HCK5 861 aaKnown RBP4.3□□□□□ -1.72
RFC4-213ENST00000489028 SPATA31A1Q5TZJ5 1347 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 CCDC187A0A096LP49 1063 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 PODXLO00592 558 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 PRYO14603 147 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 PCDH17O14917 1159 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 IDUAP35475 653 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 RABEP1Q15276 862 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 TMEM63BQ5T3F8 832 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 KRT73Q86Y46 540 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 IPO4Q8TEX9 1081 aaKnown RBP4.29□□□□□ -1.72
RFC4-213ENST00000489028 GRAMD1AQ96CP6 724 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 COQ8BQ96D53 544 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 CCDC136Q96JN2 1154 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 SIGLEC11Q96RL6 698 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 TRNAU1APQ9NX07 287 aaKnown RBP4.29□□□□□ -1.72
RFC4-213ENST00000489028 TUBA8Q9NY65 449 aaPredicted RBP4.29□□□□□ -1.72
RFC4-213ENST00000489028 ELOVL5Q9NYP7 299 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 DTNAQ9Y4J8 743 aa4.29□□□□□ -1.72
RFC4-213ENST00000489028 PPEF2O14830 753 aa4.28□□□□□ -1.72
RFC4-213ENST00000489028 CTIFO43310 598 aaKnown RBP4.28□□□□□ -1.72
RFC4-213ENST00000489028 VIPP01282 170 aa4.28□□□□□ -1.72
RFC4-213ENST00000489028 CYP19A1P11511 503 aaPredicted RBP4.28□□□□□ -1.72
RFC4-213ENST00000489028 ABCB4P21439 1286 aa4.28□□□□□ -1.72
RFC4-213ENST00000489028 NDUFS1P28331 727 aa4.28□□□□□ -1.72
RFC4-213ENST00000489028 IGHMBP2P38935 993 aaKnown RBP4.28□□□□□ -1.72
RFC4-213ENST00000489028 MMP13P45452 471 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms