RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 SDHAF4Q5VUM1 108 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 RNF180Q86T96 592 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 CLEC4CQ8WTT0 213 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 RNF39Q9H2S5 420 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 SPAG6O75602 509 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 PAMP19021 973 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 BRCC3P46736 316 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 GDF10P55107 478 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 TSTA3Q13630 321 aaPredicted RBP13.66□□□□□ -0.22
HMGN1-216ENST00000486741 C9orf57Q5W0N0 161 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 CYB5D1Q6P9G0 228 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 TRIM67Q6ZTA4 783 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 GPBP1L1Q9HC44 474 aaPredicted RBP13.66□□□□□ -0.22
HMGN1-216ENST00000486741 SPATS2LQ9NUQ6 558 aaKnown RBP13.66□□□□□ -0.22
HMGN1-216ENST00000486741 IPPQ9Y573 584 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 PRRC2BQ5JSZ5 2229 aaKnown RBP13.66□□□□□ -0.22
HMGN1-216ENST00000486741 IL1R2P27930 398 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 LHX1P48742 406 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 ATXN3P54252 364 aaPredicted RBP13.66□□□□□ -0.22
HMGN1-216ENST00000486741 RPL10AP62906 217 aaKnown RBP13.66□□□□□ -0.22
HMGN1-216ENST00000486741 CHSY1Q86X52 802 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 ANKRD52Q8NB46 1076 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 NRDE2Q9H7Z3 1164 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 ZDHHC18Q9NUE0 388 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 SLC24A2Q9UI40 661 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 MYH4Q9Y623 1939 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 TYW5A2RUC4 315 aaKnown RBP13.65□□□□□ -0.22
HMGN1-216ENST00000486741 MANSC4A6NHS7 340 aaPredicted RBP13.65□□□□□ -0.22
HMGN1-216ENST00000486741 SREBF2Q12772 1141 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 NBPF20Q3BBV1 942 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 C1orf146Q5VVC0 180 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 C16orf46Q6P387 395 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 STRA6Q9BX79 667 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 DRG1Q9Y295 367 aaKnown RBP13.65□□□□□ -0.22
HMGN1-216ENST00000486741 KAT6AQ92794 2004 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 SCAMP3O14828 347 aaKnown RBP13.65□□□□□ -0.22
HMGN1-216ENST00000486741 MTA2O94776 668 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 ENDOD1O94919 500 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 HADHBP55084 474 aaKnown RBP13.65□□□□□ -0.22
HMGN1-216ENST00000486741 MAP3K10Q02779 954 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 POU6F1Q14863 301 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 FAM110CQ1W6H9 321 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.65□□□□□ -0.22
HMGN1-216ENST00000486741 NT5DC4Q86YG4 428 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 PYROXD2Q8N2H3 581 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 KAT2BQ92831 832 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 RPRD1AQ96P16 312 aaPredicted RBP13.65□□□□□ -0.22
HMGN1-216ENST00000486741 TMEM237Q96Q45 408 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 TKTL2Q9H0I9 626 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 PRDM12Q9H4Q4 367 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 ETNK2Q9NVF9 386 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 NOP53Q9NZM5 478 aaKnown RBP13.65□□□□□ -0.22
HMGN1-216ENST00000486741 GOLGA4Q13439 2230 aaKnown RBP13.65□□□□□ -0.22
HMGN1-216ENST00000486741 SMAPO00193 183 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 TRPA1O75762 1119 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 ITGAVP06756 1048 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 PACS2Q86VP3 889 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 PIK3R5Q8WYR1 880 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 SPOCK2Q92563 424 aa13.65□□□□□ -0.22
HMGN1-216ENST00000486741 FRMD8P1Q9BZ68 369 aaPredicted RBP13.65□□□□□ -0.22
HMGN1-216ENST00000486741 CFAP73A6NFT4 308 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 B2RBV5 119 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 MYL2P10916 166 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 ELNP15502 786 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 YBX3P16989 372 aaKnown RBP eCLIP13.64□□□□□ -0.236e-11■□□□□ 9.1
HMGN1-216ENST00000486741 NPR3P17342 541 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 ART3Q13508 389 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 HSP90AA5PQ58FG0 334 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 LCLAT1Q6UWP7 414 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 WWP1Q9H0M0 922 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 LHX5Q9H2C1 402 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 PCDH18Q9HCL0 1135 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 TRPC7Q9HCX4 862 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 IARS2Q9NSE4 1012 aaKnown RBP13.64□□□□□ -0.23
HMGN1-216ENST00000486741 IL1RAPL1Q9NZN1 696 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 SPRP35270 261 aaPredicted RBP13.64□□□□□ -0.23
HMGN1-216ENST00000486741 PGM1P36871 562 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 OCRLQ01968 901 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 YWHAHQ04917 246 aaPredicted RBP13.64□□□□□ -0.23
HMGN1-216ENST00000486741 SPRYD7Q5W111 196 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 KLC3Q6P597 504 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 POLNQ7Z5Q5 900 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 EFHBQ8N7U6 833 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 CDHR5Q9HBB8 845 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 FAM53CQ9NYF3 392 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 GRID1Q9ULK0 1009 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 ZBBXA8MT70 800 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 PMM2O15305 246 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 ATP5HO75947 161 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 LTFP02788 710 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 PDHA1P08559 390 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 DRD4P21917 467 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 KCNA4P22459 653 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 PSMB4P28070 264 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 NDUFV1P49821 464 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 SERPINB9P50453 376 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 ELMO2Q96JJ3 720 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 SDCBP2Q9H190 292 aa13.64□□□□□ -0.23
HMGN1-216ENST00000486741 PRDM5Q9NQX1 630 aaPredicted RBP13.64□□□□□ -0.23
HMGN1-216ENST00000486741 SUFUQ9UMX1 484 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms