RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 DSG1Q02413 1049 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 TTC39BQ5VTQ0 682 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-228ENST00000486227 ARHGAP22Q7Z5H3 698 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 ANKRD23Q86SG2 305 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 DEFB106AQ8N104 65 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 TTC30BQ8N4P2 665 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 THTPAQ9BU02 230 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 C10orf88Q9H8K7 445 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 WRAP73Q9P2S5 460 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-228ENST00000486227 MYH2Q9UKX2 1941 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 LIN7AO14910 233 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-228ENST00000486227 ASS1P00966 412 aaKnown RBP11.37□□□□□ -0.59
HDAC6-228ENST00000486227 ARF4P18085 180 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-228ENST00000486227 CACNA2D1P54289 1103 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 EPHB3P54753 998 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 CNGA2Q16280 664 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 CCDC124Q96CT7 223 aaKnown RBP11.37□□□□□ -0.59
HDAC6-228ENST00000486227 CEP41Q9BYV8 373 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 TASP1Q9H6P5 420 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 SAE1Q9UBE0 346 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-228ENST00000486227 SNCAIPQ9Y6H5 919 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 DUOX1Q9NRD9 1551 aa11.37□□□□□ -0.59
HDAC6-228ENST00000486227 BTNL10A8MVZ5 291 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 BTBD19C9JJ37 291 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 RPL7AP62424 266 aaKnown RBP11.36□□□□□ -0.59
HDAC6-228ENST00000486227 SLC6A3Q01959 620 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 ROR2Q01974 943 aaKnown RBP11.36□□□□□ -0.59
HDAC6-228ENST00000486227 C15orf59Q2T9L4 293 aaPredicted RBP11.36□□□□□ -0.59
HDAC6-228ENST00000486227 APTXQ7Z2E3 356 aaKnown RBP11.36□□□□□ -0.59
HDAC6-228ENST00000486227 TMEM199Q8N511 208 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 UCMAQ8WVF2 138 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 PRCCQ92733 491 aaPredicted RBP11.36□□□□□ -0.59
HDAC6-228ENST00000486227 PCDHB18PQ96TA0 734 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 TTYH3Q9C0H2 523 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 NDFIP2Q9NV92 336 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 ARHGAP28Q9P2N2 729 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 ZNF711Q9Y462 761 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 NCANO14594 1321 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 CNTNAP2Q9UHC6 1331 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 SOWAHBA6NEL2 793 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 ASMTLO95671 621 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 PECAM1P16284 738 aaPredicted RBP11.36□□□□□ -0.59
HDAC6-228ENST00000486227 ATP4AP20648 1035 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 AMPD1P23109 780 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 NOMO3P69849 1222 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 EFEMP1Q12805 493 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 ATP6V0D2Q8N8Y2 350 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 ELMO2Q96JJ3 720 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 SENP8Q96LD8 212 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 FAM111AQ96PZ2 611 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 TBCBQ99426 244 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 SUN2Q9UH99 717 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 SLC39A10Q9ULF5 831 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 TRIM33Q9UPN9 1127 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 CARNS1A5YM72 827 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 TGM2P21980 687 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 ZBTB41Q5SVQ8 909 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 LLGL2Q6P1M3 1020 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 KATNAL2Q8IYT4 538 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 ALG3Q92685 438 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 EGFL8Q99944 293 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 ADAM2Q99965 735 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 RNPEPQ9H4A4 650 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 HACD3Q9P035 362 aa11.36□□□□□ -0.59
HDAC6-228ENST00000486227 DNALI1O14645 258 aaPredicted RBP11.35□□□□□ -0.59
HDAC6-228ENST00000486227 RASSF9O75901 435 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 ZSCAN5DPP0CG00 497 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 GFAPP14136 432 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 AVPR1AP37288 418 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 ERFP50548 548 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 ALDH18A1P54886 795 aaKnown RBP11.35□□□□□ -0.59
HDAC6-228ENST00000486227 KCNJ2P63252 427 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 CNGA3Q16281 694 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 SPRYD7Q5W111 196 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 DCUN1D1Q96GG9 259 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 DHX33Q9H6R0 707 aaKnown RBP11.35□□□□□ -0.59
HDAC6-228ENST00000486227 MANSC1Q9H8J5 431 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 GRID1Q9ULK0 1009 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 GRIN2DO15399 1336 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 CCDC85CA6NKD9 419 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 SDR42E2A6NKP2 422 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 SIGLEC16A6NMB1 481 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 MBL2P11226 248 aaPredicted RBP11.35□□□□□ -0.59
HDAC6-228ENST00000486227 SCNN1GP51170 649 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 SPIRE1Q08AE8 756 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 TWF1Q12792 350 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 CDH18Q13634 790 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 TRIP10Q15642 601 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 LRRC36Q1X8D7 754 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 SNX30Q5VWJ9 437 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 PRELID2Q8N945 189 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 INPP5DQ92835 1189 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 HES6Q96HZ4 224 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 DEFB118Q96PH6 123 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 GMLQ99445 158 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 PAFAH2Q99487 392 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 TRIM54Q9BYV2 358 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 UPF3AQ9H1J1 476 aaKnown RBP11.35□□□□□ -0.59
HDAC6-228ENST00000486227 XPNPEP1Q9NQW7 623 aa11.35□□□□□ -0.59
HDAC6-228ENST00000486227 NUDT17P0C025 328 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms