RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 GDF15Q99988 308 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 CINPQ9BW66 212 aaPredicted RBP4.61□□□□□ -1.67
VPS41-213ENST00000485955 TM2D2Q9BX73 214 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 ADGRE3Q9BY15 652 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 MAGEB5Q9BZ81 275 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 ZCWPW1Q9H0M4 648 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 AGO4Q9HCK5 861 aaKnown RBP4.61□□□□□ -1.67
VPS41-213ENST00000485955 ZMYND8Q9ULU4 1186 aaPredicted RBP4.61□□□□□ -1.67
VPS41-213ENST00000485955 APOL1O14791 398 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 PMM2O15305 246 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 TLR2O60603 784 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 NDST3O95803 873 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 MST1P26927 711 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 GABRB3P28472 473 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 JAK3P52333 1124 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 WDR5P61964 334 aaKnown RBP4.6□□□□□ -1.67
VPS41-213ENST00000485955 SAFBQ15424 915 aaKnown RBP eCLIP4.6□□□□□ -1.67
VPS41-213ENST00000485955 RBMS2Q15434 407 aaKnown RBP4.6□□□□□ -1.67
VPS41-213ENST00000485955 TRIM71Q2Q1W2 868 aaKnown RBP4.6□□□□□ -1.67
VPS41-213ENST00000485955 FAM90A2PQ658T7 463 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 AWAT2Q6E213 333 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 HIBCHQ6NVY1 386 aaPredicted RBP4.6□□□□□ -1.67
VPS41-213ENST00000485955 IRF2BP2Q7Z5L9 587 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 PIP4P1Q86T03 277 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 KRT73Q86Y46 540 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 PIGOQ8TEQ8 1089 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 WIPF2Q8TF74 440 aaPredicted RBP4.6□□□□□ -1.67
VPS41-213ENST00000485955 ABHD5Q8WTS1 349 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 COLEC11Q9BWP8 271 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 NUAK2Q9H093 628 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 PCDHAC1Q9H158 963 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 TMEM8AQ9HCN3 771 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 MAN2B2Q9Y2E5 1009 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 SPATA31A1Q5TZJ5 1347 aa4.6□□□□□ -1.67
VPS41-213ENST00000485955 LY6G6EA0A0G2JKS1 128 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 NCK2O43639 380 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 BMP15O95972 392 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 MYL3P08590 195 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 CTSAP10619 480 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 TRIM27P14373 513 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 GAB1Q13480 694 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 PFKFB3Q16875 520 aaPredicted RBP4.59□□□□□ -1.67
VPS41-213ENST00000485955 ARL13BQ3SXY8 428 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 TMEM196Q5HYL7 178 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 EARS2Q5JPH6 523 aaKnown RBP4.59□□□□□ -1.67
VPS41-213ENST00000485955 BEND5Q7L4P6 421 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 GLIS1Q8NBF1 620 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 PJA1Q8NG27 643 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 CUL5Q93034 780 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 HMCESQ96FZ2 354 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 ABHD10Q9NUJ1 306 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 TMOD4Q9NZQ9 345 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 PI4KBQ9UBF8 816 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 MAFFQ9ULX9 164 aa4.59□□□□□ -1.67
VPS41-213ENST00000485955 HEMK1Q9Y5R4 338 aaPredicted RBP4.59□□□□□ -1.67
VPS41-213ENST00000485955 PRYO14603 147 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 ZSCAN9O15535 394 aaPredicted RBP4.58□□□□□ -1.68
VPS41-213ENST00000485955 CCNT2O60583 730 aaKnown RBP4.58□□□□□ -1.68
VPS41-213ENST00000485955 HARSP12081 509 aaKnown RBP4.58□□□□□ -1.68
VPS41-213ENST00000485955 MYL4P12829 197 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 PECAM1P16284 738 aaPredicted RBP4.58□□□□□ -1.68
VPS41-213ENST00000485955 DRD1P21728 446 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 TACR3P29371 465 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 IDUAP35475 653 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 STIM1Q13586 685 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 FAM110CQ1W6H9 321 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 ARHGAP15Q53QZ3 475 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.58□□□□□ -1.68
VPS41-213ENST00000485955 FAM209BQ5JX69 171 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 MRNIPQ6NTE8 343 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 TECPR1Q7Z6L1 1165 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 MRPL10Q7Z7H8 261 aaKnown RBP4.58□□□□□ -1.68
VPS41-213ENST00000485955 CCDC150Q8NCX0 1101 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 SNX27Q96L92 541 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 FCRL5Q96RD9 977 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 GATA5Q9BWX5 397 aaPredicted RBP4.58□□□□□ -1.68
VPS41-213ENST00000485955 STARD7Q9NQZ5 370 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 HEY2Q9UBP5 337 aa4.58□□□□□ -1.68
VPS41-213ENST00000485955 ZMYM2Q9UBW7 1377 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 M0QZQ0 153 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 SOCS2O14508 198 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 KIF3BO15066 747 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 CNOT3O75175 753 aaKnown RBP4.57□□□□□ -1.68
VPS41-213ENST00000485955 NTN1O95631 604 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 PLAUP00749 431 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 ALADP13716 330 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 SLC5A2P31639 672 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 DGKQP52824 942 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 ID2Q02363 134 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 SEMA3BQ13214 749 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 IFIT5Q13325 482 aaKnown RBP4.57□□□□□ -1.68
VPS41-213ENST00000485955 BFSP2Q13515 415 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 PMS2P11Q13670 270 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 ATP1A4Q13733 1029 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 LAMB3Q13751 1172 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 SLC9C1Q4G0N8 1177 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 ANO7Q6IWH7 933 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 DEF8Q6ZN54 512 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 PIK3AP1Q6ZUJ8 805 aa4.57□□□□□ -1.68
VPS41-213ENST00000485955 UBE2Q1Q7Z7E8 422 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms