RNA–Protein interactions for RNA: ENST00000484855.2

CTSA-207, Transcript of cathepsin A, humanhuman

TSL 1 (best)

Gene CTSA, Length 2,183 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-207ENST00000484855 SF3B1O75533 1304 aaKnown RBP eCLIP17.36■□□□□ 0.37
CTSA-207ENST00000484855 PLXNA3P51805 1871 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 RIPK2O43353 540 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 GOT1P17174 413 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 SLC5A3P53794 718 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 IFRD2Q12894 506 aaPredicted RBP17.35■□□□□ 0.37
CTSA-207ENST00000484855 SLC29A2Q14542 456 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 TERF2Q15554 542 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 NFE2Q16621 373 aaPredicted RBP17.35■□□□□ 0.37
CTSA-207ENST00000484855 CTXN3Q4LDR2 81 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 C1orf53Q5VUE5 145 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 ZNF280DQ6N043 979 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 ZCCHC9Q8N567 271 aaKnown RBP17.35■□□□□ 0.37
CTSA-207ENST00000484855 FAM76AQ8TAV0 307 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 PGAP3Q96FM1 320 aaPredicted RBP17.35■□□□□ 0.37
CTSA-207ENST00000484855 ZNF333Q96JL9 665 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 TMEM175Q9BSA9 504 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 GPR62Q9BZJ7 368 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 FOXP3Q9BZS1 431 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 TMBIM4Q9HC24 238 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 TMPRSS4Q9NRS4 437 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 DDIT4Q9NX09 232 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 ATP11BQ9Y2G3 1177 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 AIF1P55008 147 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 MORF4L2Q15014 288 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 RNASEH2BQ5TBB1 312 aaKnown RBP17.35■□□□□ 0.37
CTSA-207ENST00000484855 BSPRYQ5W0U4 402 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 KCTD16Q68DU8 428 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 CEP128Q6ZU80 1094 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 B4GALNT4Q76KP1 1039 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 PCGF5Q86SE9 256 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 SCN4BQ8IWT1 228 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 LRRC43Q8N309 656 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 SCAMP5Q8TAC9 235 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 FUBP3Q96I24 572 aaKnown RBP eCLIP17.35■□□□□ 0.37
CTSA-207ENST00000484855 PWWP2AQ96N64 755 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 SLC9A7Q96T83 725 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 TRIM62Q9BVG3 475 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 CENPHQ9H3R5 247 aa17.35■□□□□ 0.37
CTSA-207ENST00000484855 WDR6Q9NNW5 1121 aaKnown RBP17.35■□□□□ 0.37
CTSA-207ENST00000484855 SHBGP04278 402 aa17.34■□□□□ 0.37
CTSA-207ENST00000484855 STIP1P31948 543 aaKnown RBP17.34■□□□□ 0.37
CTSA-207ENST00000484855 RPL22P35268 128 aaKnown RBP17.34■□□□□ 0.37
CTSA-207ENST00000484855 CTCFP49711 727 aaPredicted RBP17.34■□□□□ 0.37
CTSA-207ENST00000484855 KRT71Q3SY84 523 aa17.34■□□□□ 0.37
CTSA-207ENST00000484855 UBAP2Q5T6F2 1119 aaKnown RBP17.34■□□□□ 0.37
CTSA-207ENST00000484855 FUT10Q6P4F1 479 aa17.34■□□□□ 0.37
CTSA-207ENST00000484855 RNF139Q8WU17 664 aa17.34■□□□□ 0.37
CTSA-207ENST00000484855 NTAN1Q96AB6 310 aa17.34■□□□□ 0.37
CTSA-207ENST00000484855 TBX21Q9UL17 535 aa17.34■□□□□ 0.37
CTSA-207ENST00000484855 SHOC2Q9UQ13 582 aa17.34■□□□□ 0.37
CTSA-207ENST00000484855 H3BRJ5 948 aa17.33■□□□□ 0.37
CTSA-207ENST00000484855 TNFRSF10BO14763 440 aa17.33■□□□□ 0.37
CTSA-207ENST00000484855 MAP3K6O95382 1288 aa17.33■□□□□ 0.37
CTSA-207ENST00000484855 GALTP07902 379 aa17.33■□□□□ 0.37
CTSA-207ENST00000484855 FGFR3P22607 806 aa17.33■□□□□ 0.37
CTSA-207ENST00000484855 AMPD1P23109 780 aa17.33■□□□□ 0.37
CTSA-207ENST00000484855 MRPL58Q14197 206 aaKnown RBP17.33■□□□□ 0.37
CTSA-207ENST00000484855 B3GALT6Q96L58 329 aa17.33■□□□□ 0.37
CTSA-207ENST00000484855 ATP6V1G3Q96LB4 118 aa17.33■□□□□ 0.37
CTSA-207ENST00000484855 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.33■□□□□ 0.373e-6■■□□□ 12.6
CTSA-207ENST00000484855 PCDHB5Q9Y5E4 795 aa17.33■□□□□ 0.37
CTSA-207ENST00000484855 LTBP2Q14767 1821 aa17.33■□□□□ 0.37
CTSA-207ENST00000484855 CFAP69A5D8W1 941 aa17.33■□□□□ 0.36
CTSA-207ENST00000484855 OR6C75A6NL08 312 aa17.33■□□□□ 0.36
CTSA-207ENST00000484855 HMGB1P1B2RPK0 211 aaPredicted RBP17.33■□□□□ 0.36
CTSA-207ENST00000484855 NT5C1B-RDH14C9J2C7 533 aa17.33■□□□□ 0.36
CTSA-207ENST00000484855 F9P00740 461 aa17.33■□□□□ 0.36
CTSA-207ENST00000484855 PBX3P40426 434 aa17.33■□□□□ 0.36
CTSA-207ENST00000484855 NR2C2P49116 596 aa17.33■□□□□ 0.36
CTSA-207ENST00000484855 GBE1Q04446 702 aa17.33■□□□□ 0.36
CTSA-207ENST00000484855 ELAVL2Q12926 359 aaKnown RBP17.33■□□□□ 0.36
CTSA-207ENST00000484855 NCBP2-AS2Q69YL0 99 aa17.33■□□□□ 0.36
CTSA-207ENST00000484855 VSTM1Q6UX27 236 aa17.33■□□□□ 0.36
CTSA-207ENST00000484855 HOOK3Q86VS8 718 aa17.33■□□□□ 0.36
CTSA-207ENST00000484855 SH2D3CQ8N5H7 860 aa17.33■□□□□ 0.36
CTSA-207ENST00000484855 UHMK1Q8TAS1 419 aaKnown RBP17.33■□□□□ 0.36
CTSA-207ENST00000484855 TRIM66O15016 1216 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 KCNN4O15554 427 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 CREB3O43889 395 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 UPP2O95045 317 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 ACSL3O95573 720 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 ADRA1BP35368 520 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 YWHAGP61981 247 aaKnown RBP eCLIP17.32■□□□□ 0.36
CTSA-207ENST00000484855 SCAPQ12770 1279 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 ARL13BQ3SXY8 428 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 CNKSR3Q6P9H4 555 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.32■□□□□ 0.362e-16■■■■□ 24.7
CTSA-207ENST00000484855 TAC4Q86UU9 113 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 CDKL3Q8IVW4 592 aaPredicted RBP17.32■□□□□ 0.36
CTSA-207ENST00000484855 PPIL6Q8IXY8 311 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 PRCCQ92733 491 aaPredicted RBP17.32■□□□□ 0.36
CTSA-207ENST00000484855 EXOC4Q96A65 974 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 PGLYRP2Q96PD5 576 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 RBM15Q96T37 977 aaKnown RBP eCLIP17.32■□□□□ 0.36
CTSA-207ENST00000484855 PRDM16Q9HAZ2 1276 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 ARHGEF4Q9NR80 690 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 TMEM39AQ9NV64 488 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 FBXW11Q9UKB1 542 aa17.32■□□□□ 0.36
CTSA-207ENST00000484855 FARP1Q9Y4F1 1045 aaPredicted RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms