RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 RAE1P78406 368 aaKnown RBP4□□□□□ -1.77
CCDC88A-212ENST00000474059 MTAPQ13126 283 aa4□□□□□ -1.77
CCDC88A-212ENST00000474059 INSCQ1MX18 579 aa4□□□□□ -1.77
CCDC88A-212ENST00000474059 BRDTQ58F21 947 aaPredicted RBP4□□□□□ -1.77
CCDC88A-212ENST00000474059 IFIT1BQ5T764 474 aaKnown RBP4□□□□□ -1.77
CCDC88A-212ENST00000474059 GFI1BQ5VTD9 330 aa4□□□□□ -1.77
CCDC88A-212ENST00000474059 NPNTQ6UXI9 565 aa4□□□□□ -1.77
CCDC88A-212ENST00000474059 C16orf71Q8IYS4 520 aaPredicted RBP4□□□□□ -1.77
CCDC88A-212ENST00000474059 SLC44A5Q8NCS7 719 aa4□□□□□ -1.77
CCDC88A-212ENST00000474059 NUDCD2Q8WVJ2 157 aa4□□□□□ -1.77
CCDC88A-212ENST00000474059 ACO2Q99798 780 aaKnown RBP4□□□□□ -1.77
CCDC88A-212ENST00000474059 NCKIPSDQ9NZQ3 722 aa4□□□□□ -1.77
CCDC88A-212ENST00000474059 IP6K2Q9UHH9 426 aa4□□□□□ -1.77
CCDC88A-212ENST00000474059 AGO2Q9UKV8 859 aaKnown RBP4□□□□□ -1.77
CCDC88A-212ENST00000474059 SLC27A6Q9Y2P4 619 aa4□□□□□ -1.77
CCDC88A-212ENST00000474059 CLEC18AA5D8T8 446 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 FAM227AF5H4B4 570 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 PYCARD-AS1I3L0S3 204 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 PHGDHO43175 533 aaKnown RBP3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 AP1G1O43747 822 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 OFD1O75665 1012 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 PIAS2O75928 621 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 SYF2O95926 243 aaKnown RBP3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 SOX2P48431 317 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 JAK3P52333 1124 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 ANAPC15P60006 121 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 WDR5P61964 334 aaKnown RBP3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 LTBQ06643 244 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 GAB1Q13480 694 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 PTGR1Q14914 329 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 ZBTB46Q86UZ6 589 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 FBXL14Q8N1E6 418 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 TMEM199Q8N511 208 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 IQCF1Q8N6M8 205 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 CLEC18CQ8NCF0 446 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 OIT3Q8WWZ8 545 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 PIMREGQ9BSJ6 248 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 SELENOOQ9BVL4 669 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 C22orf23Q9BZE7 217 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 CD93Q9NPY3 652 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 PAPOLBQ9NRJ5 636 aaKnown RBP3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 DKK4Q9UBT3 224 aa3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 NKX1-2Q9UD57 310 aaPredicted RBP3.99□□□□□ -1.77
CCDC88A-212ENST00000474059 A6NNC1 897 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 F8W810 466 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 PODXLO00592 558 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 TNFRSF13BO14836 293 aaPredicted RBP3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 IGKV3-20P01619 116 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 CD63P08962 238 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 KLRC1P26715 233 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 KRTAP10-12P60413 245 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 DNASE1L3Q13609 305 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 ARHGEF7Q14155 803 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 SMTNL2Q2TAL5 461 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 OVCH2Q7RTZ1 564 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 DAAM2Q86T65 1068 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 NR2C2APQ86WQ0 139 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 PIGKQ92643 395 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 TAAR9Q96RI9 348 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 RHOBTB2Q9BYZ6 727 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 DHX36Q9H2U1 1008 aaKnown RBP3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 AS3MTQ9HBK9 375 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 THSD1Q9NS62 852 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 CPNE7Q9UBL6 633 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 RGS17Q9UGC6 210 aaPredicted RBP3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 ANKRD6Q9Y2G4 727 aa3.98□□□□□ -1.77
CCDC88A-212ENST00000474059 PRSS47A8MTI9 375 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 PRYO14603 147 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 WNT1P04628 370 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 HMGB1P09429 215 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 MYBP10242 640 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 VCAM1P19320 739 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 TBXAS1P24557 533 aaPredicted RBP3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 NEK2P51955 445 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 EIF4A1P60842 406 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 TXNL4AP83876 142 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 CCDC15Q0P6D6 951 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 MTA1Q13330 715 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 KCNAB1Q14722 419 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 ST3GAL2Q16842 350 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 KRTAP24-1Q3LI83 254 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 EME1Q96AY2 570 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 HOOK2Q96ED9 719 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 MED30Q96HR3 178 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 ARL8BQ9NVJ2 186 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 STEAP1Q9UHE8 339 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 COL15A1P39059 1388 aa3.97□□□□□ -1.77
CCDC88A-212ENST00000474059 NOTCH3Q9UM47 2321 aa3.96□□□□□ -1.77
CCDC88A-212ENST00000474059 UGDHO60701 494 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 TUSC2O75896 110 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 TMIGD3P0DMS9 266 aaPredicted RBP3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 SLC7A1P30825 629 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 SLC12A2P55011 1212 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 STK3Q13188 491 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 NFATC4Q14934 902 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 CLCA4Q14CN2 919 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 PGM5Q15124 567 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 ANO6Q4KMQ2 910 aa3.96□□□□□ -1.78
CCDC88A-212ENST00000474059 INO80DQ53TQ3 878 aaPredicted RBP3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms